Basic Information

Insect: Lordiphosa mommai
Gene Symbol: -
Assembly: GCA_018904225.1
Location: JAEIFT010000747.1:17630-25919[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.093 5.3 7.8 0.3 3 23 275 296 274 296 0.91

2 10 0.00058 0.033 14.7 1.2 6 23 305 322 305 322 0.99

3 10 9.4e-06 0.00053 20.3 0.3 1 23 328 351 328 351 0.98

4 10 0.00046 0.026 15.0 0.4 1 23 363 385 363 385 0.97

5 10 6.2e-05 0.0035 17.7 3.0 1 23 392 415 392 415 0.96

6 10 1.5e-05 0.00087 19.7 1.8 1 23 421 443 421 443 0.96

7 10 0.066 3.7 8.2 0.5 2 23 452 473 451 473 0.96

8 10 5.1e-05 0.0029 18.0 2.9 2 23 479 501 478 501 0.95

9 10 2.3e-07 1.3e-05 25.4 0.7 2 23 508 529 507 529 0.97

10 10 0.00023 0.013 16.0 4.4 1 23 535 558 535 558 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.093	5.3	7.8	0.3	3	23	275	296	274	296	0.91
2	10	0.00058	0.033	14.7	1.2	6	23	305	322	305	322	0.99
3	10	9.4e-06	0.00053	20.3	0.3	1	23	328	351	328	351	0.98
4	10	0.00046	0.026	15.0	0.4	1	23	363	385	363	385	0.97
5	10	6.2e-05	0.0035	17.7	3.0	1	23	392	415	392	415	0.96
6	10	1.5e-05	0.00087	19.7	1.8	1	23	421	443	421	443	0.96
7	10	0.066	3.7	8.2	0.5	2	23	452	473	451	473	0.96
8	10	5.1e-05	0.0029	18.0	2.9	2	23	479	501	478	501	0.95
9	10	2.3e-07	1.3e-05	25.4	0.7	2	23	508	529	507	529	0.97
10	10	0.00023	0.013	16.0	4.4	1	23	535	558	535	558	0.96

Sequence Information

Coding Sequence: ATGATTTGTCGTTTGTGCCTGCGGAGCATAAATGCCAACAATGCGGTGTTCCTGTTTGAGACCGATGAGACATTGGCCGAAACCAGGCTGGTCAAGATGATAGCCAAGTTTCTGCAACTGGAGATTTTGCCCGATGATGGCATCTCCACCACCGTCTGCAGCGAATGCTGTGAACATCTGGAGGATTTCAATAGTTTCTGGCAGTTGGTGGAACAGAAGCAGGGTACACTTAAGAAAGAATTTCTCACCGTGGACGTGGATTGTGTTGCCATGAAATGGGCCGCAGACGCTGGCAGTGTGGATGTGGATGTTAATATGGATGAACTGCCGCTGGTGACAGTGGAAATGGATGAGAAACCCTTGGATATGCATAATATAAGTCTACTGGGTAGTGTTTTGGATGTGAATGTGGATGAGCAGGAAGTGCACCAGGTGTCCATTAAACAGCCACTGTCGGATTATCTCACAGATGAGGAGGAGGATGAAAAACCCATTCTAGGTGATAGTTGCAGTGAATTTGGCGAGGCTGCCACCTTCCTGGAAGACGACGACGATGACGACGACTCCTCGGATGATGAACCTCTGGTCAAGTTGCAGCATAAACTTAAACCCAAACGCAAATACACCAAACAGAAACGCATCCCCACCCTCTCCCAGGAGCTCAAAGATCTGCAAAAAAAGAAACCAACTAATCGTCATGTGCCCACAGAGGTGCAGCAGACCGAACTGCAATTGGCCTTGGAACGCAAACCCAAGGGCTGTTCGCGTGCTCAATTGGCCAAACGCTATGAGGAGGTGATTGCCAGTTTTATGAGTGCCAATTGTGATCTGTGTGACTTTAGTGGCAAATATCTGAGCGAACTGAAGACCCACTTCCTGGAGGCGCATCAACGTGAATTCTATATCAAATGCTGTAACAAAATATTCACACGCGCCTGCAATCTAATGGATCACATACGCAAACATGTCAATCCCAAGCTGTTTACATGCACCATTTGCAACAAATCACTCAACTCGCAGGATTATCTGGCCACACATATCGAAACGGTGCACAATAAGGCGGGCCAAATTGGCAAAGTTTTGAAATTTCCCTGTGCCAAATGTGAGCGCACGTTTAGCAGCGAACGTCGATTGGCAAATCATTTGGCTAAACATGATACGGATCAATTGGAGCATAGCTGTGAAATATGCCAAAAGAGTTTCGCCAACGTTCATCGTTTGCGTCGACACATTCAATCCATACACGAAGATCTACATCCGCATGTTTGCGATATTTGTGGTAAAAAGTTTAAATTCAAACCCTCATTTGAGCGTCATTTATTGGAGCATCAGGGTGTGGTGGCGCCCGCCATGGAGTGTCCCATCTGTGGTGTGTGGCTAAAGAATGAGCATAGCTTGCGTTTGCATCGTTTTACGCACGATAGCACCGATACGGTGTGCCCACATTGCTCCAAGACCTGCACCTCGCGCACCGCACTGCGTGCCCATATCAAATATGCGCATAAATTGACCACAAATCTGCAGTGCACCTACTGTGAGAAGAGTTTTAAGCAACAGCGCAATCTGGAGGAGCATATGGCCATTCACACCGGTCTGCAGCTATACAATTGTCCACACTGTCCGAAGGAATGCCGGTCGCGCTCGAATATGTATGTGCACATTAAGCAGCGGCATGCAGACGAATGGCTCAAGGCCAAAATGGCACGTTCCCATAACCCGCAATTCAAACCGCTGGCCTAA
Protein Sequence: MICRLCLRSINANNAVFLFETDETLAETRLVKMIAKFLQLEILPDDGISTTVCSECCEHLEDFNSFWQLVEQKQGTLKKEFLTVDVDCVAMKWAADAGSVDVDVNMDELPLVTVEMDEKPLDMHNISLLGSVLDVNVDEQEVHQVSIKQPLSDYLTDEEEDEKPILGDSCSEFGEAATFLEDDDDDDDSSDDEPLVKLQHKLKPKRKYTKQKRIPTLSQELKDLQKKKPTNRHVPTEVQQTELQLALERKPKGCSRAQLAKRYEEVIASFMSANCDLCDFSGKYLSELKTHFLEAHQREFYIKCCNKIFTRACNLMDHIRKHVNPKLFTCTICNKSLNSQDYLATHIETVHNKAGQIGKVLKFPCAKCERTFSSERRLANHLAKHDTDQLEHSCEICQKSFANVHRLRRHIQSIHEDLHPHVCDICGKKFKFKPSFERHLLEHQGVVAPAMECPICGVWLKNEHSLRLHRFTHDSTDTVCPHCSKTCTSRTALRAHIKYAHKLTTNLQCTYCEKSFKQQRNLEEHMAIHTGLQLYNCPHCPKECRSRSNMYVHIKQRHADEWLKAKMARSHNPQFKPLA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00916542;
90% Identity: iTF_00918412;
80% Identity: -