Basic Information

Insect: Lordiphosa clarofinis
Gene Symbol: -
Assembly: GCA_018904275.1
Location: JAEIGQ010000018.1:3032914-3038976[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.13 6.6 7.5 1.3 3 23 282 303 281 304 0.92

2 10 0.00068 0.035 14.7 1.2 6 23 312 329 312 329 0.99

3 10 1.1e-05 0.00056 20.3 0.3 1 23 335 358 335 358 0.98

4 10 0.00069 0.035 14.7 0.5 1 23 370 392 370 392 0.97

5 10 7.4e-05 0.0037 17.7 3.0 1 23 399 422 399 422 0.96

6 10 1.8e-05 0.00092 19.6 1.8 1 23 428 450 428 450 0.96

7 10 0.078 4 8.2 0.5 2 23 459 480 458 480 0.96

8 10 6e-05 0.0031 18.0 2.9 2 23 486 508 485 508 0.95

9 10 3.1e-07 1.6e-05 25.2 0.7 2 23 515 536 514 536 0.97

10 10 0.00027 0.014 15.9 4.4 1 23 542 565 542 565 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.13	6.6	7.5	1.3	3	23	282	303	281	304	0.92
2	10	0.00068	0.035	14.7	1.2	6	23	312	329	312	329	0.99
3	10	1.1e-05	0.00056	20.3	0.3	1	23	335	358	335	358	0.98
4	10	0.00069	0.035	14.7	0.5	1	23	370	392	370	392	0.97
5	10	7.4e-05	0.0037	17.7	3.0	1	23	399	422	399	422	0.96
6	10	1.8e-05	0.00092	19.6	1.8	1	23	428	450	428	450	0.96
7	10	0.078	4	8.2	0.5	2	23	459	480	458	480	0.96
8	10	6e-05	0.0031	18.0	2.9	2	23	486	508	485	508	0.95
9	10	3.1e-07	1.6e-05	25.2	0.7	2	23	515	536	514	536	0.97
10	10	0.00027	0.014	15.9	4.4	1	23	542	565	542	565	0.96

Sequence Information

Coding Sequence: ATGATTTGTCGTTTGTGCTTGCGCAGCATAAATGCCATTAATGCGGTGTTCCTATTCGAGACGGATGAGACGCTGGCGGAGACCAGGCTGGTCAAGATGATAGCCAAGTTTCTGCAATTGGAGATTATGCCCGATGACAGCATTTCCACCTGCGTCTGTAGCGAGTGCTGTGAACATCTGGAGGACTTCAATAGCTTCTGGCAGTTGGTGGAGCAGAAGCAGGGCACACTTAAAAAAGAGTTTCTCACCGTGGACGTGGACTGTGGAGCCATGAAATGGGCAACGGACACCATTAGTGTGGATGTGGATGTCAATATGGATGAGCTGCCTCTGGTGACGGTGGAAATGGATGAGAAACCTTTGGATATGCACAATTTAAGTCTGTTGGGCAGTGTTTTGGATGTGAATGTGGATGAGCAGGAGGAGCCGCATCAGCAGTTAAGCATTAAACAGCCACTGTCCGAGTATCCCACAGATGAGGAGGACGAAAAGCCCATGATAGAGGACAGTGGCAGTGAATTTGGTGAGGCTGCGGCTATACTAGACGACAACGATGACGAGGACGACTCCTCGGATGATGAACCCCTGGTCAAGCTGCAGCATAAACTTAAACCGAAACGCAAATACACCAAACAGAAACGCACTCTCACTCTCTCCCAGGAGCTTAAGGATCTGTTAGACGATGGCTCCTCACCCAGCAAGCAAAAGAAGAAATCTGCAGGACCCACAGAGGTGCAGGAAACCGAACTGCAGTCCGCCCTGGAACGCAAACCCAAAGGCTGCTCGCGCGCCCAGTTGGCCAAGCGCTATGAGGAGATTATAGCCAGTTTTATGAGTGCCAATTGTGATCTGTGTGACTTTAGTGGCAAATACTTAAGCGAACTGAAGACCCACTTCCAGGAGGTGCATCATCGGGAGTTCTATATCAAATGCTGTAATAAGATTTTCACTCGCGCCTGCAATCTTATGGATCACATACGCAAACATGTCAATCCCAAGCTATTTACCTGCACCATCTGCAACAAATCCCTCAACTCACAGGATTATCTGGCCACACATATCGAAACGGTGCACAATAAGGCGGGACAAATGGGCAAAGTATTGAAATTTCCCTGTGTCAAATGTGAAAGGACGTTTAGCAGCGAACGAAGATTGGCAAACCATTTGGCCAAACATGATACGGATCAACTGGAGCATAGCTGCGAAATATGCCAAAAGAGTTTCGCCAACGTACATCGCTTGCGTCGTCACATTCAATCCATACACGAAGATCTACATCCACATGTTTGCGATATTTGTGGCAAAAAGTTCAAATTTAAACCCTCATTTGAGCGTCATTTACTGGAGCATCAGGGTGTGGTGGCACCCGCCATGGAATGTCCCATCTGTGGTGTTTGGCTTAAGAATGAGCATAGCTTGCGTTTGCATCGTTTCACCCACGATAGCACCGACACGGTGTGTCCGCATTGCTCCAAAACCTGCACCTCGCGCACCGCTCTGCGTGCCCACATCAAATACGCCCATAAATTGACCACAAATCTGCAGTGCACCTACTGTGAGAAGACGTTTAAACAACAGCGCAATCTGGAGGAGCATATGGCCATACATACGGGTCTGCAGCTCTACAACTGTCCGCACTGTCCCAAGGAGTGCCGTTCCCGCTCGAATATGTATGTGCACATTAAGCAGCGGCATGCGGACGAATGGCTCAAGGCCAAAATGGCACGTTCCCATAACCCGCAATTCAAACCGCTGGCCTAA
Protein Sequence: MICRLCLRSINAINAVFLFETDETLAETRLVKMIAKFLQLEIMPDDSISTCVCSECCEHLEDFNSFWQLVEQKQGTLKKEFLTVDVDCGAMKWATDTISVDVDVNMDELPLVTVEMDEKPLDMHNLSLLGSVLDVNVDEQEEPHQQLSIKQPLSEYPTDEEDEKPMIEDSGSEFGEAAAILDDNDDEDDSSDDEPLVKLQHKLKPKRKYTKQKRTLTLSQELKDLLDDGSSPSKQKKKSAGPTEVQETELQSALERKPKGCSRAQLAKRYEEIIASFMSANCDLCDFSGKYLSELKTHFQEVHHREFYIKCCNKIFTRACNLMDHIRKHVNPKLFTCTICNKSLNSQDYLATHIETVHNKAGQMGKVLKFPCVKCERTFSSERRLANHLAKHDTDQLEHSCEICQKSFANVHRLRRHIQSIHEDLHPHVCDICGKKFKFKPSFERHLLEHQGVVAPAMECPICGVWLKNEHSLRLHRFTHDSTDTVCPHCSKTCTSRTALRAHIKYAHKLTTNLQCTYCEKTFKQQRNLEEHMAIHTGLQLYNCPHCPKECRSRSNMYVHIKQRHADEWLKAKMARSHNPQFKPLA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00916542;
90% Identity: iTF_00918412;
80% Identity: -