Lfen002837.1
Basic Information
- Insect
- Lordiphosa fenestrarum
- Gene Symbol
- -
- Assembly
- GCA_035044985.1
- Location
- JAWNNO010000731.1:6228566-6243651[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-11 2.5e-08 33.9 0.0 1 40 596 636 596 639 0.90 2 4 5.9e-14 1.4e-10 41.1 0.1 2 39 651 688 650 691 0.94 3 4 1.4e-17 3.2e-14 52.7 0.0 1 45 705 750 705 750 0.98 4 4 1.4e-19 3.2e-16 59.1 0.0 1 43 757 800 757 801 0.97
Sequence Information
- Coding Sequence
- ATGCTACATACATCCCAGCTGAAATCGGCACGTTTCGAGCTGCGTCCAAGTCCAATCAAGCGACGTCGTCGTCGAGAGACCACCTCAACCACCAGTCAGCCAGGCGGTAATAAGAATTTCTCCTTCTCGGTAGTGTGCGGTCTGTTACGCACCGCCGAGCAATTGAAAATCAAGGGTCTCTGCGAGACAGCTGAGAATGCGGATGATCTGAATGATGCGGCCACTGCCACAATAACCGTGTCCGAGAACATACAACAGTCAGTTGTGGGCAATATTGTGAATGCCACCATAGTGCCGGGAGCGCCTTCACCCACGGtcgagcaacagcagcagcagcatcagcaagctCACCAACAggaccaacagcagcagttgcatgcccagcagcaacagcagcagcagcagatcaACGCGGCCCTGTTGTCCCAACACGGCGTGTCCAATAGTAACGTTGCCCTCAGCGGCCAACTGCTGAGCACAGCgagcggcagcaacagcagtggCAGCGGTGCCGGTCAACTGCaggcacagcagcagcagcagacacaGTCCGCTGGCCTACAGCCCGCGCTGCGCAAGTCGCGCCTCAAGCGCTCCAAGTCGCCAGATCTGCAGCACCATCCGCAGACCATACTGATCCAGGGACAGAGCCAAACGTCCATTGTGAGTCTGCAGCAGACGGTCGACGGCAATTATATACCAGTCGGCGGCAACGGCGACGACTCGGACGTGGATCAAGAGCACGAGCACGAACACGTTGACGAGCACGAGCACGAGCACGACCACGACAGTAAGCCGGGGAAGATCTGCAAGACAGAGCACTCGGTGGCCTCGCCAGCGTCCAACTCGTCCAGCGCCTCGAACAATGCAGCGGGCGTGAGCGGCGTGACAGCAGCAGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgaCTAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGCCCATGGGATTCCTGGATTTCACACCCGAGCCACCAGCACCATCTGCCACACCAGTCACCGTAACGGAACATGTCGACCTCTCGTGCAATCCGAGTACGGACACGCGAGATTTATCAAATCCCACCGAAGCGCTCGACATTGACAATCATCTGGCGCAACAAATCCATCGGCTTGATCAATCTCCCATGCATTCGATAGGCCATCATCACACTGGCGATGAGAGCAACTCGCAGCTGGTGCAGCACATCAAAAGTGAGGTGATCGAGGCCAAACACTTGGCGGCTGCTCAGCAACATGCTCATGTCCAGGCCCAGCAACATGTCCATCATCAAgcccaccagcagcagcagcatctgcATACCCAGCAACTGCTggcccagcagcaacagcaacagcagcagcagcaacaccatcagcagcagcagcagaatgtGCATGCACAGCATGGGGGTCATGTGACGCATGCGGAGATTGGTGGGGCCACCGTCATGGAGATTGATCCGAGTCAAATAAAGCATGAGCCAGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCGTCGGGTCACATGGacATGTACAACTCGGATACGAGCGAGGACTCCATGATGATCGCCAATGGCTCACCGCACGATCAAAAGGAGCCGCACTATACGAATTTGGATCAGCAACACGGCCTGGGTGGCAGCGTTTGCGGCCCCGGCCCaggtggtgctggtggtggcaTTGGTGGTGGGGCTGGCTCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATCCCCTCGACCACGCTGTGGCAACGGGCTCACCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGATGCATTGCAGAATGCCTTGGAGGCATTGCGATCGGGTCAAATATCCGCGAATAAAGCGTCGAAAGCCTTTGGCATACCCTCATCGACGCTGTACAAGATAGCGCGTCGGGAGGGCATCCGTTTGGCAGCACCATTTAATGCCGCCCCAACCACGTGGACGCCCGAGGACCTGGAGCGTGCACTGGAGGCGATTCGAGCGGGTAATACGTCGGTACAGAAGGCGAGTGCCGAGTTTGGCATACCCACAGGAACACTTTATGGACGCTGCAAACGTGAGGGCATTGAACTGTCGCGTTCGAATCCCACACCTTGGTCCGAGGATGCCATGAACGAGGCCTTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAATCAGGCGGCGATACACTACAACCTGCCCTATAGCTCGCTCTATGGCCGCTTCAAGCGGGGCAAGTACGATGTGGTGGCGAATACCAGTGGAGTGGCGCTAATGAATACCTCAGGCAATACAACCGGCAGCATTGAGATTATCGAGCATAGTCAGGAGAATTCGTTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCATCGCCGCATCCGCCGCCCACACCGCAGCATCATAGTACACCGCAGCATCACAGCTCCTCGCAAGGGCCGCCAACGCCTCAGCATATGCAACAGCATGTGGTGCACATGCAACAGTCGCCACATCAGggtcatcatcagcagcagcacatgCAACAGGATGTGGTTACATCGAGTAGCCAAGTAGTGCatagccagcagcagcagcatcaacaacagcagcagcaacagcagcagcaacaacagcagcaacaacagcagcagcaacaacaacagcagcagcagcagcaacttcaGCAGATTTATCAGCATCATGGCACGCCCGAGCGTAGTTGA
- Protein Sequence
- MLHTSQLKSARFELRPSPIKRRRRRETTSTTSQPGGNKNFSFSVVCGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQSVVGNIVNATIVPGAPSPTVEQQQQQHQQAHQQDQQQQLHAQQQQQQQQINAALLSQHGVSNSNVALSGQLLSTASGSNSSGSGAGQLQAQQQQQTQSAGLQPALRKSRLKRSKSPDLQHHPQTILIQGQSQTSIVSLQQTVDGNYIPVGGNGDDSDVDQEHEHEHVDEHEHEHDHDSKPGKICKTEHSVASPASNSSSASNNAAGVSGVTAAGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQQIHRLDQSPMHSIGHHHTGDESNSQLVQHIKSEVIEAKHLAAAQQHAHVQAQQHVHHQAHQQQQHLHTQQLLAQQQQQQQQQQHHQQQQQNVHAQHGGHVTHAEIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGSVCGPGPGGAGGGIGGGAGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALMNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPPTPQHHSTPQHHSSSQGPPTPQHMQQHVVHMQQSPHQGHHQQQHMQQDVVTSSSQVVHSQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00619072;
- 90% Identity
- iTF_00917999; iTF_00918241;
- 80% Identity
- -