Lcol015096.1
Basic Information
- Insect
- Lordiphosa collinella
- Gene Symbol
- -
- Assembly
- GCA_018904265.1
- Location
- JAEIFV010000259.1:286064-289584[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.7e-07 1.3e-05 25.6 1.4 1 23 202 224 202 224 0.98 2 15 0.012 0.59 10.9 0.6 2 23 256 277 255 277 0.97 3 15 0.0016 0.076 13.7 0.6 1 23 355 378 355 378 0.96 4 15 0.029 1.4 9.7 0.7 1 19 385 403 385 406 0.93 5 15 0.013 0.63 10.8 2.1 1 23 415 437 415 437 0.97 6 15 0.0016 0.076 13.7 5.1 1 23 444 467 444 467 0.93 7 15 7.9e-05 0.0039 17.8 1.4 2 23 475 496 474 496 0.96 8 15 0.0031 0.15 12.8 0.1 2 21 523 542 522 543 0.94 9 15 0.0025 0.12 13.1 2.3 1 23 599 622 599 622 0.98 10 15 0.053 2.6 8.9 2.5 1 23 659 682 659 682 0.95 11 15 0.00021 0.01 16.5 1.6 2 23 712 734 711 734 0.95 12 15 0.00089 0.043 14.5 2.0 1 23 748 770 748 770 0.95 13 15 0.00027 0.013 16.1 0.8 1 23 776 798 776 798 0.99 14 15 7.6e-07 3.7e-05 24.1 1.8 1 23 804 826 804 826 0.98 15 15 0.37 18 6.3 0.4 1 13 832 844 832 846 0.87
Sequence Information
- Coding Sequence
- ATGAAATTGCCAGGCGTGTGTCGCACTTGCGATGCAAGTGCCAGGGGGGCAAGAAAGCTGGTTAATCTGGACACGCCCAGCAAGGAGTTCCCAGACAAATCGCTGGCCAATTTGCTCTGCGAACTTACCAATATCGATCTGCAAGTACCTTTTGCTGAGAAATTGCCACAATGCCTGTGCACCAGTTGCTCAAAAAGACTTGTGTCCGCCTTTGAATTTGTGAAACAGGCTTTGGCTGCCAATGATTTGTTGATGGAGCATCTGAAGAAGACGTCATCCAGCAGCGATTGCTTGCAGGAGGCACCCATGGAACTATGCGCCGATTTACATCTAGAACTCAAAATGGAAACGGAAGATGAAGAAGACTCGGTGGGAGTCAAAGATATAACCTGCACAGAACTGCCCGAGTTGCCTCTGAAGACATCTGTGGATCCCTTGATAAAGCATGTGGCAATAAAGCAAGAACCCAACGTTTCAGAGGAAGACCCAGATTACGACACACCAGACTCTGATACGGATGGCGAAGATTCTGTGGACTACCAGCCTAGGGAGAAGCGCGTGTCAAATCGTAACCAAACCGTCATCAAGGAGCAAAAACGCAAATTCCAGTGCGCCGAGTGTCCAAAAAGCTTTAAACGTGCCGCGCATTTAAAACAGCATCTTAAAGTGCATGCGGATCCCAAGCCACCTGCCAGTGTCAGTGAGCACAAAAAGGCCAAGGCGATTGATCTCAATCTGTGCAAGCCGCATGGCTACAAGCTCATCGAGTGTTTGATTTGTCAGAATCAATTCAGTAAAATAGCAGATCTTCGCCATCATCTGGAGACGCATCCGGAAGTTGATACACTGGCAGGGCAGCAGCCGGAAGAGTTGGCCAAGCTGTTTTATCCCAATGCCAAGGATGTCAGCGAGGAACAATTGAGGCAACTGATACGTCAAGATTTGTCCAGTGGCCAATATCAAAATTTCTACTCAATAACCAATCAGCATGGATATGAGATGGAACTGGACAGCTCGGAGACGGAATGCGACTCAGAAACTAAGGAGGAACCTCAAGTCAAATACAATTGTGAGCTGTGCCAGCAGGGATATGCAAGAAAGTATCAGCTTTACGATCACCAGAATCAAGCACATGCCTGGCTAGACGCTCCCCATGTCTGTGGCCGTTGTGATGCCCGATTCGTTAGCCAACAGCTGCTCAGACATCACAATGAGTCGCTGTGTCGCAATGTCCAGAAACGTTTCCACTGCCTCAAGTGTCCGCTACGCTTTCGCTGGAAACAAAATCTCAGGGCTCATGTCCGAGAGCACCGGAAAAATATCCAACTCCATGAGTGTCACCACTGCAAAAGTGTCTTTCGCAATAAAAAATCTCTTACTATTCATCTGCTCGGGGTGCATGCCGAAGACTCCACGGTGCTGCCGTGCCAGTGGTGTAATCGCAAGTTCTTCCGTCAGGACTATCTGGTCAAGCATCTGAAACGTCATGGCTTACGAGAACAGGACATTCCACTGGCCGAAACTATTATAGCGGCCACCTCCAAACCTAATGGAGTCAAGCGGATAAGCTGCAAAATCTGTAATCTGCAATTCGAGCGCATTTACGATCTTCGTGCTCACATACAGCAGGAGCTGATGATATCCAAATCATCTTTGGCCTCCTCTCTGCATCAAAACTACGACTCGCTCCAAAACTATTCCATAACCAATGAATCTGGTTTCGAACTACATCTGGGCGATTCGGAGACGGAGGATGAAATGCCGGGCAACTGCATGGGACAGGCCCAATTGGTATACATTTGTGAGCTGTGTAGTCTGCAGTGCCGACGCAAGTACGAAATGATTCAGCACCAGCGTACTGTGCATTGTTTTGACAAGATGCCGCATGAATGCGATAAGTGTATCTTCAAGTGTGTGTCCCAGAGCATCATGGATCATCATCGGCTGGCGCAATGTGGCAGCTTAGAGAAAAGGCATTCGTGCAGTCATTGCAGCTATAAATTCATGTGGCCCGAGAATCTGGAACAGCACATACAACTACAGCATGGCCAGTTAAAGACGACAACCACCGGAGAGCAGCAGCCTACCAGTGAAAACTTGGCTGGGCCAATGAAGGATACTTCGTCTGTACTCCAGTGTCCCCACTGCGATCGCACTTATCAAATGAAATCCAGACTTAACAATCATATACGGGATGTTCATGTAAATGGCGATCGCAAGCGTAAGGATGCCGTCAAGTTGTTTCTCTGCTCGCTGTGTGGATACAAGACCAATACTTCATACCAATTGCTCACCCATACGCGTCGTCATACAGGTGAAAAACCTTTCAAATGCGATCTATGCGAAGCTGCATTTCCGCGGCACTCGGAAATGATATCGCATCGCCGCATGCACACTGGAGAGAAGCCTTTCCATTGCACTGTTTGTGGCAAGGATTTCGCTCGCGCAGAGAAGCTGAAGAGGCACATGCTGACGCACAGCGGTTTGAAACCGCATGCCTGCACCTACTGTGAGAAGAGTTATCGTCAGGCCAAAGGATCTGAAGTTGCATCTGCAGCAGCACACGGGCGAGTGTCCCTTCATCTGTGGCACTTGTGGCGAACGTTTCATCCAAAGCAGCACACTGGAGAAGCATCGCATGATGCGACGACATTTTGA
- Protein Sequence
- MKLPGVCRTCDASARGARKLVNLDTPSKEFPDKSLANLLCELTNIDLQVPFAEKLPQCLCTSCSKRLVSAFEFVKQALAANDLLMEHLKKTSSSSDCLQEAPMELCADLHLELKMETEDEEDSVGVKDITCTELPELPLKTSVDPLIKHVAIKQEPNVSEEDPDYDTPDSDTDGEDSVDYQPREKRVSNRNQTVIKEQKRKFQCAECPKSFKRAAHLKQHLKVHADPKPPASVSEHKKAKAIDLNLCKPHGYKLIECLICQNQFSKIADLRHHLETHPEVDTLAGQQPEELAKLFYPNAKDVSEEQLRQLIRQDLSSGQYQNFYSITNQHGYEMELDSSETECDSETKEEPQVKYNCELCQQGYARKYQLYDHQNQAHAWLDAPHVCGRCDARFVSQQLLRHHNESLCRNVQKRFHCLKCPLRFRWKQNLRAHVREHRKNIQLHECHHCKSVFRNKKSLTIHLLGVHAEDSTVLPCQWCNRKFFRQDYLVKHLKRHGLREQDIPLAETIIAATSKPNGVKRISCKICNLQFERIYDLRAHIQQELMISKSSLASSLHQNYDSLQNYSITNESGFELHLGDSETEDEMPGNCMGQAQLVYICELCSLQCRRKYEMIQHQRTVHCFDKMPHECDKCIFKCVSQSIMDHHRLAQCGSLEKRHSCSHCSYKFMWPENLEQHIQLQHGQLKTTTTGEQQPTSENLAGPMKDTSSVLQCPHCDRTYQMKSRLNNHIRDVHVNGDRKRKDAVKLFLCSLCGYKTNTSYQLLTHTRRHTGEKPFKCDLCEAAFPRHSEMISHRRMHTGEKPFHCTVCGKDFARAEKLKRHMLTHSGLKPHACTYCEKSYRQAKGSEVASAAAHGRVSLHLWHLWRTFHPKQHTGEASHDATTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00915511;
- 90% Identity
- iTF_00914674; iTF_00917391;
- 80% Identity
- -