Lcol012497.1
Basic Information
- Insect
- Lordiphosa collinella
- Gene Symbol
- tfap2e
- Assembly
- GCA_018904265.1
- Location
- JAEIFV010000275.1:151719-177640[-]
Transcription Factor Domain
- TF Family
- AP-2
- Domain
- TF_AP-2 domain
- PFAM
- PF03299
- TF Group
- Basic Domians group
- Description
- Activator protein-2 (AP-2) transcription factors constitute a family of closely related and evolutionarily conserved proteins that bind to the DNA consensus sequence GCCNNNGGC and stimulate target gene transcription [PMID: 2010091, PMID: 1998122]. Four different isoforms of AP-2 have been identified in mammals, termed AP-2 alpha, beta, gamma and delta. Each family member shares a common structure, possessing a proline/glutamine-rich domain in the N-terminal region, which is responsible for transcriptional activation [PMID: 2010091], and a helix-span-helix domain in the C-terminal region, which mediates dimerisation and site-specific DNA binding [PMID: 199812]. http://www.ebi.ac.uk/interpro/entry/IPR013854
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.4e-81 1.6e-76 256.8 0.2 1 192 243 432 243 434 0.98 2 2 0.38 8e+03 -3.3 0.3 108 138 515 545 499 563 0.51
Sequence Information
- Coding Sequence
- ATGACTTTAGCGTATGTGGATATGCCAGCAGTAATTCAGGTTCAGGAACGCCTTAGTGGTCATGGTAGTCTAGGACTGTCTAGCAGTAGCCCGGCTTACACAACCCACTCTAGCGGGCACGCGGGTAGAGGCGGTCCGACTTCTGGACATAGCGGCCATAGTAGTACCCATGGGTCGGCAGCTACCATGCATCATCAATCACTTCAATCCGATTTCCAGCCTCCATATTTTCCACCACCCTTCCATCATTCCACTCAAAGCCCCCCTCAACAACAGATATCTGGCTATTTACAGAACCACGGTGCTCTTGAATACTTGGGCACTGATCCTTATGGCCAACCCCTGTCATCACTCCACCATGCCCCCCTGCACCACTACAACCAACTGGCGGGTCTAAGGTCCACACAGGATCAACTTGGAATTCACAGAACACACAGAGAGGCTGAGTTGCAGGGACACGTAACACAACTGTCTCACGGATTCCCATATACGGATAGAAGAAGTGACTACGGTAGTGCATTATCAGCAGGAGCTGCGCATGGAACTAGGCTCGGTCATGAGCATGAATCTTTGGCGCTGCACCAAGCTTTACAAAATGCAGTTGATGATGTTCAAGCACCTGCCCTAGACGACAATGTAGCATTTATGTCAGATCTGCCTCTTATAAAGAGCATGAAAAGTGGGAAGGACGCTGGCAACATTGGTTCGGGTTCACCTAGTGAAGTATTCTGTGCAGTTCCTGGTCGCCTTAGTCTCTTATCCAGCACTTCGAAATATAAGGTCACAATTGCAGAAGTGCAGCGCCGATTGTCTCCCCCCGAGTGCTTAAACGCTTCGTTACTGGGAGGAGTTCTTAGAAGGGCAAAGAGTAAGAACGGAGGACGACTGCTAAGAGAAAAACTTGAAAAAATCGGCTTAAACCTACCTGCTGGAAGGCGAAAAGCTGCTAACGTGACATTACTGACTTCCTTGGTAGAAGGGGAGGCGACGCACTTAGCCAAGGACTTCCACTTTGTTTGCGAAACCGAATTTCCTGCAAGACAACTGGCTGAATACATTGTGCGACATCAAACCGAGCCCCAGGATTCTTATAGGAGGAAAGAACTCATCCTTCACTCGCAACAGATTACAAAAGAGTTGATGCAGATATTAAGCCAAGATAGAACCACCCACTTCGGCACAAGATCGCAACACTTGCTGGAGCCGTCGATGCAGAGGCACTTAACACATTTTTCCTTGATAACGCACGGATTTGGCTCTCCTGCAATTATGGCTGTTCTCCATGCATTTCAGAATAGAAAAGGTAAACCGTCCAGATCCACCACCGGTTCAGATCCACCACCGGGTGGTCCAGATCGTCCACCGGGTGGTCCAGATCCTCCACCGGGTCCAAATCCTCTACCGGGTGGTCCAGATCCTCCACCGGGTGGTCCAGATCCTCCACCGGTAACTCGGGCTGCCGTTTTTTATTGTACTGGCTGTGTGCGGGACCTGGACCTCGACCTGGAGCTGGCACTGGACCTGGACGTGGACCTGAAAGTGGCCATTGAGGTGGCCATGGAGGTAACCATGGAGGTGGCCGTGGAGGTGGCCATTGAGGTGGCCATGGTGGTGGCTATGGAGGTGGCCATGGAGGTGGCCATGGAGGTGGCCATGGAGGTGGCCATGGAGGTGGCCATGGAGCTGTCCACGGAGGTGGATCTGTAG
- Protein Sequence
- MTLAYVDMPAVIQVQERLSGHGSLGLSSSSPAYTTHSSGHAGRGGPTSGHSGHSSTHGSAATMHHQSLQSDFQPPYFPPPFHHSTQSPPQQQISGYLQNHGALEYLGTDPYGQPLSSLHHAPLHHYNQLAGLRSTQDQLGIHRTHREAELQGHVTQLSHGFPYTDRRSDYGSALSAGAAHGTRLGHEHESLALHQALQNAVDDVQAPALDDNVAFMSDLPLIKSMKSGKDAGNIGSGSPSEVFCAVPGRLSLLSSTSKYKVTIAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRLLREKLEKIGLNLPAGRRKAANVTLLTSLVEGEATHLAKDFHFVCETEFPARQLAEYIVRHQTEPQDSYRRKELILHSQQITKELMQILSQDRTTHFGTRSQHLLEPSMQRHLTHFSLITHGFGSPAIMAVLHAFQNRKGKPSRSTTGSDPPPGGPDRPPGGPDPPPGPNPLPGGPDPPPGGPDPPPVTRAAVFYCTGCVRDLDLDLELALDLDVDLKVAIEVAMEVTMEVAVEVAIEVAMVVAMEVAMEVAMEVAMEVAMEVAMELSTEVDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00601441; iTF_00816225; iTF_01114689; iTF_00804866; iTF_00484803; iTF_00535747; iTF_00608867; iTF_01019107; iTF_01165219; iTF_01521571; iTF_00904452; iTF_00537189; iTF_00562149; iTF_01300485; iTF_00489766; iTF_00565062; iTF_00983910; iTF_01044422; iTF_01569926; iTF_00338823; iTF_00489063; iTF_00540775; iTF_00571591; iTF_00580359; iTF_00611079; iTF_00618023; iTF_01549959; iTF_01552135; iTF_01557959; iTF_00492648; iTF_00918728; iTF_01396168; iTF_01563368; iTF_00511689; iTF_00524105; iTF_00525577; iTF_00531369; iTF_00592073; iTF_00604521; iTF_00893545; iTF_01299689; iTF_00309898; iTF_00477706; iTF_00510218; iTF_00670634; iTF_01319434; iTF_01404490; iTF_00482667; iTF_00506539; iTF_00533483; iTF_00605259; iTF_00797419; iTF_00901163; iTF_01562443; iTF_00607500; iTF_00679148; iTF_00974316; iTF_01395532; iTF_01549260; iTF_01551404; iTF_00500717; iTF_00515277; iTF_00539341; iTF_00577453; iTF_00642893; iTF_00672557; iTF_00488398; iTF_00508782; iTF_00557582; iTF_00568654; iTF_00587086; iTF_01559438; iTF_00514575; iTF_01520655; iTF_00187728; iTF_00486992; iTF_00584112; iTF_00257489; iTF_00486257; iTF_00502929; iTF_00517393; iTF_00613873; iTF_01541841; iTF_00336402; iTF_00426034; iTF_00504370; iTF_00589234; iTF_00596338; iTF_00612498; iTF_00802514; iTF_00470547; iTF_00663731; iTF_01356531; iTF_01553651; iTF_00724436; iTF_01550676; iTF_01552852; iTF_00335541; iTF_00803285; iTF_01541109; iTF_00575254; iTF_00599990; iTF_00338007; iTF_00389303; iTF_00494071; iTF_00520311; iTF_00578967; iTF_00608119; iTF_00610327; iTF_00618839; iTF_00747159; iTF_00532792; iTF_01557240; iTF_01558712; iTF_00240345; iTF_00518841; iTF_00603033; iTF_00643769; iTF_00584858; iTF_00671898; iTF_00473467; iTF_01374651; iTF_00581212; iTF_01556508; iTF_00334653; iTF_00471293; iTF_00491197; iTF_00505085; iTF_00528477; iTF_00693469; iTF_00966845; iTF_00976125; iTF_01548541; iTF_00384254; iTF_00483358; iTF_00523358; iTF_00556254; iTF_00611742; iTF_00665310; iTF_01113886; iTF_00478399; iTF_00536447; iTF_00578207; iTF_00583359; iTF_00624415; iTF_00529248; iTF_00547744; iTF_00555520; iTF_00617312; iTF_00671296; iTF_00804064; iTF_01211584; iTF_01554368;
- 90% Identity
- iTF_00508782; iTF_00613873; iTF_00589234; iTF_00520311;
- 80% Identity
- -