Lbim023330.1
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_948107665.1
- Location
- OX403589.1:18946685-18968956[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.11 2.7e+03 -2.3 0.3 55 90 69 105 35 109 0.52 2 3 6.5e-76 1.5e-71 241.5 23.4 1 297 126 415 126 418 0.89 3 3 0.22 5.2e+03 -3.2 8.2 122 167 439 484 423 492 0.68
Sequence Information
- Coding Sequence
- ATGGGGAATCGATCAGAAGTAGTCACGCCTGATAACAGTGACGAGGAGAGCGGGGACGCCTTCACTGACGGTGACTTCGAAGACTCCGACGACGAAACTGTTGTTGAAAGAAACGATACCAAGTCTTCTAACATACCCATAAATGAGACTGTAAATGAACAAGTGCAGAAAACCATCACCAACGGCAACTGCTCACAAAATGGACATGAGACATTGACTCTAGAAGAGCAGCCAAAGATAAACGGACGTAAAAATAGTGATAATCAAAGTGATGTGGATATGGACAACCCCAGTGCGATACCTGAAGTGAGGCGGGACTCGCATGGGGATCAGAACCCTTCGATTGTTGGGATTATCGGAGACCAGCATAATCATGCGGAACAGCGATTGGCGGCGAGACGCGCGGCGCGGGCGGAGGCGCGGGAGATACGTATGCGGGAGCTGGAGAGACAGCAAAGGGAGCAAGAAGACCATGCCGACAAGGCGTATGACATGTATGCGGATACGGTCGGGCGGCGTGGAGGCACGCGGCTCGCCTCGCTCAGCCCCGCTACCAGTTTGGTGCACTCCCCCCGGCGGAGTTCGGAAGACTCCGCCGATGACACGTTAAACATTAAGGACTTGAGGCACGAACTAAAAGAAGTAGAAGAGAAGTTCCGCAAGGCGATGATACTAAATGCGCAGTTAGACAACGACAAAGCCGCATTGCACTACCAGCTGGAACTGCTCAAGGACCGAATTCTGGAACTGCAAGAGGAGCACGCGCAGTTACAGCGAGAGCACCGCGAGAAGTGCTCGGCGCACGAGCGGCTCAAGCGCGAGCACGTGTCGCTGGAGCGCGAGCTGTGCGGCGCGCGGGACGCCGTGCGCGCGCGGGACGCCGCCGCCGCCGCCGCCGGGTACGCCTTCGCCGAGGCCGCCGCCACCGCCGGGGACGGGGACGCCGCCACCGCCGCGCCTGGCTTTGGCTCCGTGCCGCCGCTCGCGCTGCTGTCGCACGCCACCGAGCAAGCGCTCGCGGACCAGGGGGAGGGCACGCTCGACGTGCGGTTGCAGAAGCTGGTCACCTCAAAGCAGGAGTTGGAATCGGAGGTGCGCAAACTAAAGCTGACCCTCAACGAGGAGCGAGCGGCGAGGCAGAATGGCGTCGCGAGCCGACACGACGCAGACTTGGAGAACGAACTGGAGGTGCTCCGCAAGTCTGTGTCGGAGGCCAAGGGTCGCGCGGCGCGCGCGGAGGCCGAGGCGGCGCTGCAGGCGGCCGGCGTCGCGCGCCTCGAGGCGCAGCTGCAGCGCCTGCGCGCGCGGCAGGACCTGCACGACGACCACGAGGAGCAGCTCAAGCACGAGCGGCGCAAGCTGCAGCGCGAGGCGAGAGAAGCGCTCAACCGAGTCGAAGAGTTGGAGACGGAGAATAGCCACCTGACGAAACGGCTCGACAAACTCAAGAACGCTAAGTCTGCTCTTCTAAAGGACCTGTGA
- Protein Sequence
- MGNRSEVVTPDNSDEESGDAFTDGDFEDSDDETVVERNDTKSSNIPINETVNEQVQKTITNGNCSQNGHETLTLEEQPKINGRKNSDNQSDVDMDNPSAIPEVRRDSHGDQNPSIVGIIGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYADTVGRRGGTRLASLSPATSLVHSPRRSSEDSADDTLNIKDLRHELKEVEEKFRKAMILNAQLDNDKAALHYQLELLKDRILELQEEHAQLQREHREKCSAHERLKREHVSLERELCGARDAVRARDAAAAAAGYAFAEAAATAGDGDAATAAPGFGSVPPLALLSHATEQALADQGEGTLDVRLQKLVTSKQELESEVRKLKLTLNEERAARQNGVASRHDADLENELEVLRKSVSEAKGRAARAEAEAALQAAGVARLEAQLQRLRARQDLHDDHEEQLKHERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00250477;
- 90% Identity
- -
- 80% Identity
- -