Basic Information

Insect: Locusta migratoria
Gene Symbol: -
Assembly: GCA_026315105.1
Location: scaffold182432:954597-1074235[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.002 8.4 6.8 0.0 20 46 192 218 180 221 0.87

2 10 0.0093 40 4.7 0.1 21 46 221 246 219 249 0.91

3 10 8.4e-05 0.36 11.2 0.2 21 46 249 274 247 279 0.88

4 10 0.00015 0.65 10.4 0.0 22 47 306 331 292 334 0.87

5 10 1.2 5.1e+03 -2.1 0.2 27 49 362 384 347 410 0.61

6 10 0.017 71 3.9 0.3 21 46 440 465 427 470 0.80

7 10 0.0046 20 5.7 0.2 22 46 469 493 464 498 0.86

8 10 0.0015 6.2 7.3 0.1 21 46 524 549 501 552 0.90

9 10 0.091 3.9e+02 1.5 0.1 14 46 572 605 568 610 0.78

10 10 0.47 2e+03 -0.8 0.1 26 46 613 633 604 636 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.002	8.4	6.8	0.0	20	46	192	218	180	221	0.87
2	10	0.0093	40	4.7	0.1	21	46	221	246	219	249	0.91
3	10	8.4e-05	0.36	11.2	0.2	21	46	249	274	247	279	0.88
4	10	0.00015	0.65	10.4	0.0	22	47	306	331	292	334	0.87
5	10	1.2	5.1e+03	-2.1	0.2	27	49	362	384	347	410	0.61
6	10	0.017	71	3.9	0.3	21	46	440	465	427	470	0.80
7	10	0.0046	20	5.7	0.2	22	46	469	493	464	498	0.86
8	10	0.0015	6.2	7.3	0.1	21	46	524	549	501	552	0.90
9	10	0.091	3.9e+02	1.5	0.1	14	46	572	605	568	610	0.78
10	10	0.47	2e+03	-0.8	0.1	26	46	613	633	604	636	0.87

Sequence Information

Coding Sequence: ATGTCAGCTAATTCTCAGAATGTGGCACCAGCAAAATCTCAAAAAGCCACCCATGATGTGACAATCATAGAACAAGAGTCAGTAGAAACTGGCCCACACACTGTACCACAGCAAGAGACCAAGAATCTAATCATTATAGAAGAAATTGTGGACTGTTCACTTTCAGAAGTTATTTTGGAACCTAGTACAGTGCATATTGAGGAGATAGAGGTTATGGCACAGGAAGAGGAGGAGGAGGAGGAGGAGACAGTGGTCGAGGTTGATGGCGAGAATTTCAATGAAGTGCAGTCAATAATTAGTGGCAGACCACCTGAAAGTGCTGTCTCTGTTGGCGAGGAAGACGACAATGCCAATGAATCCAGTTTCAGTTTACTTAGAGAAGCCTCCTTGGCTGCAGGAGCAGACAACAGGATACAACACAGCAAGAAGCAGGCAGCGTATTGTGGAAATAATGGAACTACGAAGTATGTACTGTATAGCAAAGAGACAGCTGCACAGTTACAGGATCTCAAAGACACCAAACACAATACATTAACGATTACTAGTTCTCTGGAGAAACGGCTCGATGCGCACACAGGTGAACAGAAATACAGCTGCGAGATTTGCGATAAGACATTCACCCAAATTAGGTTACTGAAGAACCATTTGTTGTTGCACACTGGTGAACGACCATACACTTGTGACGTCTGCCGTAAGTCATTTACATGTAATAGCGGCCTTAAGAAACACTTAAGACTGCACACAGGGGAAAAACCCTACACTTGCCCCATTTGTCAATATAAATTCGCGAATAATAGCAACTTCAATAGACATGTACGTATGCACTCTGGCCAACACCTTTATCGTTGTCTTGTGTGTAATCAGAAATTCAGGAGTAACATCGCCCTGAAGAAACACTCACAGGAGGCCACAGATGGCCATCCGTCCACTTGTGAAGTGTGTGGCAAGTCGTTCTCTAACTCGTGTGAACTGAGACAACACTTGCAACTACACAATAGTGGTAGCCAAAACAGCTGTGGCATTTCCAGCAAGACAGTCACACAAAGTAACTCACCGAAGAACCACAACGATGATCAGTACAGTTGCAAAGTCTGTTTAAAATCGTTCACATGTAGTGACAGCTTCAAGAAACACAGTCAAATGCACGAGGAGAAAAAACCGTTCAGTTGTAACTTTTGTCAACGTAAATTCTCCTATAGAAGCATCTACAATAGGCACTTACACATGCACACTGTCAAATATCTCTACAGCTGCAGCGTATGTCATCAGAAATTCAAGAGCAGCATCACCTTCAAGGAACATAAACGTGTTTGCAGTGATGACCATCCGTGCACTTGTGAAGTGTGTGGCAAGTCGTTTTATAATCCGAACGAACTGAAACAACATTTGCGAGTGCACACTTGTGAACGTCAATACAGCTGCTACATTTGCAGCAAGAAATTCAAACAAAGTAGCTCACTGAAGAGTCATTTGTTACTGCACAGTGGTAAAGGCCGATACAGTTGTGATGTGTGTCTAAAGTCATTCACATGCAGTGACACCCTCAAGAACCACTATCGGCTGCACACGGGGGAAAAACCGTACACTTGCGATGTTTGTCAACGTAAATTCTCAGATAACAGCAACTTCAAAAGGCATGTACGTATGCATTCTGGTGACCACTTATACAGCTGCCTTGTGTGTCCTCAGAAATTCAGGAGCAACATTACCCTGAAGGAACACTCACGAGTACACTCTGGTTACCATCCATGTGGTTGTGAAGTGTGTGGCAAGTCGTTCTTTAATCAAAGTGAACTGAAACAACATTTGAGAGTGCACACTGGGCAACGTGAATACAACTGTTACATTTGCAACAAGACATTCTCACACAGTAGTTACCTGAATAACCATTTGCTACTGCACAATGATGAACATTCATACAGTTGTGGTGTATTTGCAACAAAAAGTGACATAAAGGACAGGTAG
Protein Sequence: MPRDGPSPAELLHGRRHRTLLHLLQPPTHRVGSYGATRFQVSTPVLYRVFAGNKKTWLPGTIQRVLGRNMYIVRSSTGSELRRHANQLRLHRPRDPVSGFLIPDPVHRQGAQPHRSSPDYEIVPMEVDVPPMQSSPPLSPPQMTASPRGTPGPCGPPQLGPRTSEEDDLLPLGGGGRLSPGFGGFPGGSQGRCRGADGVSIPASATTPVPPVTPPPRPFSQCRRRGPQPYATTARRFGGEGCGVAQVQSARHLLFAARRHACTARRSDDDSHERPLGQRLSWPPLKDTGHFGLRTEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00912926;
90% Identity: iTF_00913207;
80% Identity: iTF_00913075;