Basic Information

Insect: Locusta migratoria
Gene Symbol: -
Assembly: GCA_026315105.1
Location: scaffold182432:954597-1074235[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.1e-06 0.00022 21.7 0.6 1 23 197 219 197 219 0.97

2 15 8.6e-05 0.0091 16.6 4.0 1 23 225 247 225 247 0.98

3 15 7.4e-08 7.9e-06 26.3 1.3 1 23 253 275 253 275 0.99

4 15 0.00046 0.049 14.3 0.5 1 19 281 299 281 302 0.95

5 15 1.9e-06 0.00021 21.8 2.1 2 23 310 331 309 331 0.96

6 15 0.02 2.2 9.2 5.6 1 23 360 382 360 382 0.98

7 15 0.027 2.8 8.8 6.1 1 23 388 410 388 410 0.98

8 15 0.0014 0.15 12.8 2.4 1 21 416 436 416 437 0.95

9 15 2.5e-07 2.6e-05 24.6 1.4 2 23 445 466 444 466 0.96

10 15 3.8e-06 0.00041 20.9 2.4 1 23 472 494 472 494 0.97

11 15 0.0016 0.17 12.7 3.8 1 23 500 522 500 522 0.98

12 15 1.3e-07 1.3e-05 25.6 2.4 1 23 528 550 528 550 0.99

13 15 0.00014 0.015 16.0 0.6 1 23 556 578 556 578 0.98

14 15 7.4e-07 7.8e-05 23.1 2.5 3 23 586 606 582 606 0.95

15 15 2.8e-06 0.0003 21.3 3.5 1 23 612 634 612 634 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.1e-06	0.00022	21.7	0.6	1	23	197	219	197	219	0.97
2	15	8.6e-05	0.0091	16.6	4.0	1	23	225	247	225	247	0.98
3	15	7.4e-08	7.9e-06	26.3	1.3	1	23	253	275	253	275	0.99
4	15	0.00046	0.049	14.3	0.5	1	19	281	299	281	302	0.95
5	15	1.9e-06	0.00021	21.8	2.1	2	23	310	331	309	331	0.96
6	15	0.02	2.2	9.2	5.6	1	23	360	382	360	382	0.98
7	15	0.027	2.8	8.8	6.1	1	23	388	410	388	410	0.98
8	15	0.0014	0.15	12.8	2.4	1	21	416	436	416	437	0.95
9	15	2.5e-07	2.6e-05	24.6	1.4	2	23	445	466	444	466	0.96
10	15	3.8e-06	0.00041	20.9	2.4	1	23	472	494	472	494	0.97
11	15	0.0016	0.17	12.7	3.8	1	23	500	522	500	522	0.98
12	15	1.3e-07	1.3e-05	25.6	2.4	1	23	528	550	528	550	0.99
13	15	0.00014	0.015	16.0	0.6	1	23	556	578	556	578	0.98
14	15	7.4e-07	7.8e-05	23.1	2.5	3	23	586	606	582	606	0.95
15	15	2.8e-06	0.0003	21.3	3.5	1	23	612	634	612	634	0.97

Sequence Information

Coding Sequence: ATGTCAGCTAATTCTCAGAATGTGGCACCAGCAAAATCTCAAAAAGCCACCCATGATGTGACAATCATAGAACAAGAGTCAGTAGAAACTGGCCCACACACTGTACCACAGCAAGAGACCAAGAATCTAATCATTATAGAAGAAATTGTGGACTGTTCACTTTCAGAAGTTATTTTGGAACCTAGTACAGTGCATATTGAGGAGATAGAGGTTATGGCACAGGAAGAGGAGGAGGAGGAGGAGGAGACAGTGGTCGAGGTTGATGGCGAGAATTTCAATGAAGTGCAGTCAATAATTAGTGGCAGACCACCTGAAAGTGCTGTCTCTGTTGGCGAGGAAGACGACAATGCCAATGAATCCAGTTTCAGTTTACTTAGAGAAGCCTCCTTGGCTGCAGGAGCAGACAACAGGATACAACACAGCAAGAAGCAGGCAGCGTATTGTGGAAATAATGGAACTACGAAGTATGTACTGTATAGCAAAGAGACAGCTGCACAGTTACAGGATCTCAAAGACACCAAACACAATACATTAACGATTACTAGTTCTCTGGAGAAACGGCTCGATGCGCACACAGGTGAACAGAAATACAGCTGCGAGATTTGCGATAAGACATTCACCCAAATTAGGTTACTGAAGAACCATTTGTTGTTGCACACTGGTGAACGACCATACACTTGTGACGTCTGCCGTAAGTCATTTACATGTAATAGCGGCCTTAAGAAACACTTAAGACTGCACACAGGGGAAAAACCCTACACTTGCCCCATTTGTCAATATAAATTCGCGAATAATAGCAACTTCAATAGACATGTACGTATGCACTCTGGCCAACACCTTTATCGTTGTCTTGTGTGTAATCAGAAATTCAGGAGTAACATCGCCCTGAAGAAACACTCACAGGAGGCCACAGATGGCCATCCGTCCACTTGTGAAGTGTGTGGCAAGTCGTTCTCTAACTCGTGTGAACTGAGACAACACTTGCAACTACACAATAGTGGTAGCCAAAACAGCTGTGGCATTTCCAGCAAGACAGTCACACAAAGTAACTCACCGAAGAACCACAACGATGATCAGTACAGTTGCAAAGTCTGTTTAAAATCGTTCACATGTAGTGACAGCTTCAAGAAACACAGTCAAATGCACGAGGAGAAAAAACCGTTCAGTTGTAACTTTTGTCAACGTAAATTCTCCTATAGAAGCATCTACAATAGGCACTTACACATGCACACTGTCAAATATCTCTACAGCTGCAGCGTATGTCATCAGAAATTCAAGAGCAGCATCACCTTCAAGGAACATAAACGTGTTTGCAGTGATGACCATCCGTGCACTTGTGAAGTGTGTGGCAAGTCGTTTTATAATCCGAACGAACTGAAACAACATTTGCGAGTGCACACTTGTGAACGTCAATACAGCTGCTACATTTGCAGCAAGAAATTCAAACAAAGTAGCTCACTGAAGAGTCATTTGTTACTGCACAGTGGTAAAGGCCGATACAGTTGTGATGTGTGTCTAAAGTCATTCACATGCAGTGACACCCTCAAGAACCACTATCGGCTGCACACGGGGGAAAAACCGTACACTTGCGATGTTTGTCAACGTAAATTCTCAGATAACAGCAACTTCAAAAGGCATGTACGTATGCATTCTGGTGACCACTTATACAGCTGCCTTGTGTGTCCTCAGAAATTCAGGAGCAACATTACCCTGAAGGAACACTCACGAGTACACTCTGGTTACCATCCATGTGGTTGTGAAGTGTGTGGCAAGTCGTTCTTTAATCAAAGTGAACTGAAACAACATTTGAGAGTGCACACTGGGCAACGTGAATACAACTGTTACATTTGCAACAAGACATTCTCACACAGTAGTTACCTGAATAACCATTTGCTACTGCACAATGATGAACATTCATACAGTTGTGGTGTATTTGCAACAAAAAGTGACATAAAGGACAGGTAG
Protein Sequence: MPRDGPSPAELLHGRRHRTLLHLLQPPTHRVGSYGATRFQVSTPVLYRVFAGNKKTWLPGTIQRVLGRNMYIVRSSTGSELRRHANQLRLHRPRDPVSGFLIPDPVHRQGAQPHRSSPDYEIVPMEVDVPPMQSSPPLSPPQMTASPRGTPGPCGPPQLGPRTSEEDDLLPLGGGGRLSPGFGGFPGGSQGRCRGADGVSIPASATTPVPPVTPPPRPFSQCRRRGPQPYATTARRFGGEGCGVAQVQSARHLLFAARRHACTARRSDDDSHERPLGQRLSWPPLKDTGHFGLRTEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00912926;
90% Identity: iTF_00913207;
80% Identity: iTF_00913269;