Basic Information

Insect: Lochmaea crataegi
Gene Symbol: -
Assembly: GCA_947563755.1
Location: OX387423.1:58869852-58872816[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.11 1.9e+03 0.6 0.0 26 45 186 205 180 211 0.85

2 12 0.05 9.1e+02 1.6 0.0 21 45 237 261 229 269 0.85

3 12 0.55 1e+04 -1.7 0.0 22 43 266 287 263 292 0.74

4 12 0.0023 41 5.9 0.1 21 44 293 316 283 320 0.90

5 12 0.00027 4.9 8.9 0.1 21 43 321 343 317 348 0.90

6 12 0.0091 1.7e+02 4.0 0.2 21 43 349 371 344 377 0.81

7 12 0.34 6.1e+03 -1.0 0.1 21 34 377 390 369 403 0.73

8 12 0.017 3.2e+02 3.1 0.0 21 44 405 428 402 435 0.85

9 12 0.0036 65 5.3 0.0 21 47 461 487 441 492 0.85

10 12 0.012 2.2e+02 3.6 0.0 21 45 517 541 510 549 0.82

11 12 0.072 1.3e+03 1.1 0.0 16 32 541 556 529 571 0.73

12 12 0.0013 24 6.7 0.1 21 52 573 604 569 609 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.11	1.9e+03	0.6	0.0	26	45	186	205	180	211	0.85
2	12	0.05	9.1e+02	1.6	0.0	21	45	237	261	229	269	0.85
3	12	0.55	1e+04	-1.7	0.0	22	43	266	287	263	292	0.74
4	12	0.0023	41	5.9	0.1	21	44	293	316	283	320	0.90
5	12	0.00027	4.9	8.9	0.1	21	43	321	343	317	348	0.90
6	12	0.0091	1.7e+02	4.0	0.2	21	43	349	371	344	377	0.81
7	12	0.34	6.1e+03	-1.0	0.1	21	34	377	390	369	403	0.73
8	12	0.017	3.2e+02	3.1	0.0	21	44	405	428	402	435	0.85
9	12	0.0036	65	5.3	0.0	21	47	461	487	441	492	0.85
10	12	0.012	2.2e+02	3.6	0.0	21	45	517	541	510	549	0.82
11	12	0.072	1.3e+03	1.1	0.0	16	32	541	556	529	571	0.73
12	12	0.0013	24	6.7	0.1	21	52	573	604	569	609	0.87

Sequence Information

Coding Sequence: ATGGAAGTGAAACAAGAACCAGACGAATCCTCTGCCGAAGAGCAAAAATTTGAAATCGAAGAACACTTTTTATTTAACACAATAGTTAGAGATGAAAAAGGTAATGACGAACTAAATAGTGCAATCACCAAAGAATTGGTCTCAATAAAACAAGAAAACAGTACTGATCTACAAACAGGATATTTAGAGCAGACATCCAAAGACATTACAATTACTTGTTATGAAGTATGGAATAATCTCCTAAATACACTCTGGTTATTTCTCTGGATTTTGCCTGGAGGCATTTTAATTTGTAAGTTATGTGGAAATTTGTATGTTAAGAAATTTGAACTTTTTAAACATATTTCGAGACATCTTGTAAATAAAACCTACAACATGGAAAAAAATGTGAGTGATAATTATCAATCGCTGGAAAGTATAAATAAGAATTCCATAAAGAGTGAAATCAAAAATGAATTATGTACTGATCAATTAATAGATTCAACAAATCAAATAAATGATAAACTTTGTTGTGTGGATATTcgtgacgattgtctttctggcgaaaaattgttcaagtgtacaatttgttggaaattatttgaagtgaaaagccatttaaatcgacatatgcgttgtcacacaggtgaaaaacgattcaaatgtaaaatttgcttaaaaccttttgccgaaaaaagtaccatggataaccatatgcgatgtcatactgacgaaaggccgtttaattgtaaaatgtgttcaaaatcgtttagaaaaaaagccgccttagataaacatgtcgggtgtcacacaggggaaaaaccattcaaatgcgaagtttgcttgaaaactttcagcgtgaaacacactttaaataaccatatgcgttgtcatacaggtgagaaaccgttcgcttgtaaagtttgtttaaaatctttcagggtgaaaagcaacttaagtaaacatatgcgttgtcacacaggtgaaagaccgttcaaatgtgaaatttgttataaattgtttagagagacaagtactttgaataagcataagcgctgtcacaccggcgaaaaaccatatacatgtaaaatttgcttgaaatccttttcacagaaatatagtcttactgtacataatcgttgccacacggaggaaacaccatttaaatgcgaaatttgtttgaaattgttcgaagggaaagatattttggctgagcacttgctttgtcacaggagcgacaatcaatttaaatgtgaaatttgttttaaaatttttataaatggaaacactttgaatagacacatgcgcagtcatacaggcaaaaacgcgtttaaatgtgaggtctgtttgaaatcttttaaggaggaggggactttaaataagcacatgcgttgtcacatcgacgaaaaaccgtttgaatgtacaatttgtttaaaattgttcagagaaaaatacgctttaaatatacacatgcgccttcacacaggcgataaaacattaatatgtgaaatttgcttaaaattatttacaaaaaaaagtcaattgcttatacatatgcgttctcacacaggtgaaaaaccattcaagtgtaaaatttgcttaaaatcttacagtaaaggaggtaatttaactaatcacatgcgctcccacacgggcgaaaaaccgtatcaatgcaacatttgtttaaaatcttttagcgttaaaagcactttgaatgctcatatgggttgtcatactgacgaaaaaccgttcaaatgcgaaatttgtttgaagtcgtttagagagaaaggaactttaactaggcacatgctttgtcactcccttgaaaaaccattcgaatgtaatgtttgtttgaaatcttataAGGGTAGTGCTATACAGGGTGTTCGAGAACTATGTTCACAAAGCAGTGAATGA
Protein Sequence: MEVKQEPDESSAEEQKFEIEEHFLFNTIVRDEKGNDELNSAITKELVSIKQENSTDLQTGYLEQTSKDITITCYEVWNNLLNTLWLFLWILPGGILICKLCGNLYVKKFELFKHISRHLVNKTYNMEKNVSDNYQSLESINKNSIKSEIKNELCTDQLIDSTNQINDKLCCVDIRDDCLSGEKLFKCTICWKLFEVKSHLNRHMRCHTGEKRFKCKICLKPFAEKSTMDNHMRCHTDERPFNCKMCSKSFRKKAALDKHVGCHTGEKPFKCEVCLKTFSVKHTLNNHMRCHTGEKPFACKVCLKSFRVKSNLSKHMRCHTGERPFKCEICYKLFRETSTLNKHKRCHTGEKPYTCKICLKSFSQKYSLTVHNRCHTEETPFKCEICLKLFEGKDILAEHLLCHRSDNQFKCEICFKIFINGNTLNRHMRSHTGKNAFKCEVCLKSFKEEGTLNKHMRCHIDEKPFECTICLKLFREKYALNIHMRLHTGDKTLICEICLKLFTKKSQLLIHMRSHTGEKPFKCKICLKSYSKGGNLTNHMRSHTGEKPYQCNICLKSFSVKSTLNAHMGCHTDEKPFKCEICLKSFREKGTLTRHMLCHSLEKPFECNVCLKSYKGSAIQGVRELCSQSSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00912438;
90% Identity: iTF_00912438;
80% Identity: iTF_00912438;