Basic Information

Insect: Lochmaea crataegi
Gene Symbol: -
Assembly: GCA_947563755.1
Location: OX387423.1:58869852-58872816[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0086 2 10.5 0.7 2 23 97 118 96 118 0.96

2 17 0.00011 0.025 16.5 5.2 1 21 185 205 185 207 0.96

3 17 0.0031 0.72 12.0 2.8 1 21 213 233 213 235 0.96

4 17 0.00031 0.073 15.1 0.5 1 19 241 259 241 261 0.95

5 17 0.00034 0.078 15.0 5.7 1 21 269 289 269 291 0.96

6 17 4.8e-05 0.011 17.7 4.0 1 21 297 317 297 319 0.95

7 17 0.018 4.1 9.6 5.4 1 21 325 345 325 347 0.95

8 17 0.00019 0.044 15.8 4.7 1 21 353 373 353 375 0.94

9 17 1.8 4.1e+02 3.3 0.6 1 20 381 400 381 403 0.83

10 17 3.8e-06 0.00089 21.1 1.2 1 23 409 431 409 431 0.99

11 17 0.0002 0.047 15.7 3.2 1 21 437 457 437 459 0.96

12 17 3.1e-05 0.0074 18.2 0.6 1 23 465 487 465 487 0.98

13 17 1.8e-05 0.0043 19.0 0.6 2 23 494 515 493 515 0.96

14 17 3.1e-06 0.00072 21.4 1.6 1 23 521 543 521 543 0.99

15 17 5e-06 0.0012 20.7 0.2 1 20 549 568 549 569 0.98

16 17 6.1e-05 0.014 17.3 3.1 1 21 577 597 577 599 0.95

17 17 1.3 3.1e+02 3.7 0.2 1 11 605 615 605 618 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0086	2	10.5	0.7	2	23	97	118	96	118	0.96
2	17	0.00011	0.025	16.5	5.2	1	21	185	205	185	207	0.96
3	17	0.0031	0.72	12.0	2.8	1	21	213	233	213	235	0.96
4	17	0.00031	0.073	15.1	0.5	1	19	241	259	241	261	0.95
5	17	0.00034	0.078	15.0	5.7	1	21	269	289	269	291	0.96
6	17	4.8e-05	0.011	17.7	4.0	1	21	297	317	297	319	0.95
7	17	0.018	4.1	9.6	5.4	1	21	325	345	325	347	0.95
8	17	0.00019	0.044	15.8	4.7	1	21	353	373	353	375	0.94
9	17	1.8	4.1e+02	3.3	0.6	1	20	381	400	381	403	0.83
10	17	3.8e-06	0.00089	21.1	1.2	1	23	409	431	409	431	0.99
11	17	0.0002	0.047	15.7	3.2	1	21	437	457	437	459	0.96
12	17	3.1e-05	0.0074	18.2	0.6	1	23	465	487	465	487	0.98
13	17	1.8e-05	0.0043	19.0	0.6	2	23	494	515	493	515	0.96
14	17	3.1e-06	0.00072	21.4	1.6	1	23	521	543	521	543	0.99
15	17	5e-06	0.0012	20.7	0.2	1	20	549	568	549	569	0.98
16	17	6.1e-05	0.014	17.3	3.1	1	21	577	597	577	599	0.95
17	17	1.3	3.1e+02	3.7	0.2	1	11	605	615	605	618	0.88

Sequence Information

Coding Sequence: ATGGAAGTGAAACAAGAACCAGACGAATCCTCTGCCGAAGAGCAAAAATTTGAAATCGAAGAACACTTTTTATTTAACACAATAGTTAGAGATGAAAAAGGTAATGACGAACTAAATAGTGCAATCACCAAAGAATTGGTCTCAATAAAACAAGAAAACAGTACTGATCTACAAACAGGATATTTAGAGCAGACATCCAAAGACATTACAATTACTTGTTATGAAGTATGGAATAATCTCCTAAATACACTCTGGTTATTTCTCTGGATTTTGCCTGGAGGCATTTTAATTTGTAAGTTATGTGGAAATTTGTATGTTAAGAAATTTGAACTTTTTAAACATATTTCGAGACATCTTGTAAATAAAACCTACAACATGGAAAAAAATGTGAGTGATAATTATCAATCGCTGGAAAGTATAAATAAGAATTCCATAAAGAGTGAAATCAAAAATGAATTATGTACTGATCAATTAATAGATTCAACAAATCAAATAAATGATAAACTTTGTTGTGTGGATATTcgtgacgattgtctttctggcgaaaaattgttcaagtgtacaatttgttggaaattatttgaagtgaaaagccatttaaatcgacatatgcgttgtcacacaggtgaaaaacgattcaaatgtaaaatttgcttaaaaccttttgccgaaaaaagtaccatggataaccatatgcgatgtcatactgacgaaaggccgtttaattgtaaaatgtgttcaaaatcgtttagaaaaaaagccgccttagataaacatgtcgggtgtcacacaggggaaaaaccattcaaatgcgaagtttgcttgaaaactttcagcgtgaaacacactttaaataaccatatgcgttgtcatacaggtgagaaaccgttcgcttgtaaagtttgtttaaaatctttcagggtgaaaagcaacttaagtaaacatatgcgttgtcacacaggtgaaagaccgttcaaatgtgaaatttgttataaattgtttagagagacaagtactttgaataagcataagcgctgtcacaccggcgaaaaaccatatacatgtaaaatttgcttgaaatccttttcacagaaatatagtcttactgtacataatcgttgccacacggaggaaacaccatttaaatgcgaaatttgtttgaaattgttcgaagggaaagatattttggctgagcacttgctttgtcacaggagcgacaatcaatttaaatgtgaaatttgttttaaaatttttataaatggaaacactttgaatagacacatgcgcagtcatacaggcaaaaacgcgtttaaatgtgaggtctgtttgaaatcttttaaggaggaggggactttaaataagcacatgcgttgtcacatcgacgaaaaaccgtttgaatgtacaatttgtttaaaattgttcagagaaaaatacgctttaaatatacacatgcgccttcacacaggcgataaaacattaatatgtgaaatttgcttaaaattatttacaaaaaaaagtcaattgcttatacatatgcgttctcacacaggtgaaaaaccattcaagtgtaaaatttgcttaaaatcttacagtaaaggaggtaatttaactaatcacatgcgctcccacacgggcgaaaaaccgtatcaatgcaacatttgtttaaaatcttttagcgttaaaagcactttgaatgctcatatgggttgtcatactgacgaaaaaccgttcaaatgcgaaatttgtttgaagtcgtttagagagaaaggaactttaactaggcacatgctttgtcactcccttgaaaaaccattcgaatgtaatgtttgtttgaaatcttataAGGGTAGTGCTATACAGGGTGTTCGAGAACTATGTTCACAAAGCAGTGAATGA
Protein Sequence: MEVKQEPDESSAEEQKFEIEEHFLFNTIVRDEKGNDELNSAITKELVSIKQENSTDLQTGYLEQTSKDITITCYEVWNNLLNTLWLFLWILPGGILICKLCGNLYVKKFELFKHISRHLVNKTYNMEKNVSDNYQSLESINKNSIKSEIKNELCTDQLIDSTNQINDKLCCVDIRDDCLSGEKLFKCTICWKLFEVKSHLNRHMRCHTGEKRFKCKICLKPFAEKSTMDNHMRCHTDERPFNCKMCSKSFRKKAALDKHVGCHTGEKPFKCEVCLKTFSVKHTLNNHMRCHTGEKPFACKVCLKSFRVKSNLSKHMRCHTGERPFKCEICYKLFRETSTLNKHKRCHTGEKPYTCKICLKSFSQKYSLTVHNRCHTEETPFKCEICLKLFEGKDILAEHLLCHRSDNQFKCEICFKIFINGNTLNRHMRSHTGKNAFKCEVCLKSFKEEGTLNKHMRCHIDEKPFECTICLKLFREKYALNIHMRLHTGDKTLICEICLKLFTKKSQLLIHMRSHTGEKPFKCKICLKSYSKGGNLTNHMRSHTGEKPYQCNICLKSFSVKSTLNAHMGCHTDEKPFKCEICLKSFREKGTLTRHMLCHSLEKPFECNVCLKSYKGSAIQGVRELCSQSSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00912649;
90% Identity: iTF_00912649;
80% Identity: iTF_00912649;