Lcra011450.1
Basic Information
- Insect
- Lochmaea crataegi
- Gene Symbol
- -
- Assembly
- GCA_947563755.1
- Location
- OX387422.1:131282420-131284523[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.045 11 8.3 2.4 1 23 106 129 106 129 0.95 2 14 0.00077 0.18 13.9 0.5 2 19 144 161 143 164 0.91 3 14 0.1 24 7.2 2.6 1 21 178 198 178 199 0.93 4 14 0.0023 0.53 12.4 0.9 1 21 210 230 210 231 0.95 5 14 4.3 1e+03 2.1 2.2 1 23 242 265 242 265 0.92 6 14 4.9e-05 0.012 17.6 0.8 1 23 270 292 270 292 0.96 7 14 3.2e-05 0.0076 18.2 3.4 1 23 332 354 332 354 0.96 8 14 1.1e-06 0.00026 22.8 2.4 1 23 360 382 360 382 0.96 9 14 7.4e-07 0.00017 23.4 0.5 3 23 390 411 388 411 0.97 10 14 0.0086 2 10.6 3.7 1 23 419 441 419 441 0.96 11 14 7e-06 0.0016 20.3 1.6 1 21 447 467 447 469 0.95 12 14 0.00033 0.076 15.0 2.0 1 23 475 498 475 498 0.96 13 14 0.00036 0.084 14.9 3.2 1 23 512 534 512 534 0.98 14 14 6.5e-05 0.015 17.2 3.4 1 23 540 563 540 563 0.96
Sequence Information
- Coding Sequence
- ATGTTCTCAGAAAAGTGTTCAATTTGTTTTACATTGAACGATGTACTTAAAGAAATTTCCCAAATTGATGATGATAGCTTAACTCTTTCTTCTAAATTGCAAGCTGTAGTTCCTGAAGTGGAATGGCTTGTTGGTTACAAAATTTGTGAAACATGTATATTTGAAGTTAAAACAGCATATACATTTAGAACAAAATGCTTAAATATTAAGAATAACTTGAAAGATGAGAGCTTAGAAAAATTTGAAGAATATGATGACATTAAAGAAGATTATGATTCAGATCTTGAACAGGAAACTAAAGAAACAAAGCAATACTTTATATGTTACCATTGTGGGCATAACAGTTTAACAAAAGATGATTTAATAAAACACATTCAAGAAACACATCAAAATGGAGATAAAGAACTACCAAAGTATAAGAGAAATACTATGTGTACCCACTGTGGTAGGAAGTTTACAAAACAATCATCAATAGAAGAACATTCACTGGTGTGTGATGGAGTAAGGAGGCACAGAAAAATTAAAACTGAGTATCAGTGTAAGACATGTAAACGTTTCTATAGTTCAGACAAAATCTTAAGATCCCATCAAAAAAGATGTGATGAAAAACAATTAAAAATCACCGATTACCAATGCTCAAAATGTAACGTTTATTATAAAAGTGCGAAAACTCTAATAAATCATACAAATAGAGGCTGTAAAAAAGATGGTAAAGAACCTGCTTACTTTTGCAAGTGTTGTGAAAATATTTTTGATACAGTATTAGATCTCAAAGATCATATGTTTAAGGACCATGACATAATCGAGTTTCGGTGTGAAAAATGTAACAAGGTGTTTGATAATAGTGAAGGATACAATGCACATAAATCTGAACATAAGAAATCAAAACGATTGTTTTCCTGTGAAGTGTGTAGTGTAGAATTTCAGTATTTAAAAGAAGTGGTGGATCATTGCTTAAACAAACATTCACTAAAACCAAAATCAATTCGACCCTACTTCTGTGATTTGTGTCAAAAAAGGTTTCGTTCATCTACAAATTTACAAAATCACAAACTTTACCACGAAGGTAATAGATCTCATATTTGCAGTATTTGTGGCAAAAGTTTCATAACGAAGAGCGATCTTCATAATCATGAAATAACTCATAATGATGACAGAAATTTTGGATGTGATAAATGTGGCAAGGCATTCAAGACAAATAACAATCTATGGACACATTATCGAATAGTTCACACAGATCCTATGTTATGGAAGTTTGTTTGTAAACTATGTGGAAAAAGATTTCCATTGAAATCGAATCATGATCAACATTTTCGTAGACATACCGGACAGAAGGAGTTTATCTGTCCACTTTGCAAAAAACAATTTGCCAGTAAAAGTGAACTTCAAGCACACATTAGATGTCATTCTAATGTGAAAAGGTATGTTTGTGACCACTGTGGAAGAGATTACAGAAAGAAAAACAGTCTTGACATTCACCTTACTAAATCACATGGTATTGGCAATGCAAAACTTCCAGTTCGAGAGAAAAAATATGCTTGTCATATTTGCCCTGGCAGGTTTTATGACAGAAACAAATTGGCCAGGCATTTGTGCACACATTCTGGATTAAAACCGTTTGCCTGTTTTGCATGCGATAAAAAATTTACCGACAAATCGTATATGAAGCACCATCTAAAAACAGCCCACAATATTTTTGAAGATTCTGTGGAATGTCCTTGA
- Protein Sequence
- MFSEKCSICFTLNDVLKEISQIDDDSLTLSSKLQAVVPEVEWLVGYKICETCIFEVKTAYTFRTKCLNIKNNLKDESLEKFEEYDDIKEDYDSDLEQETKETKQYFICYHCGHNSLTKDDLIKHIQETHQNGDKELPKYKRNTMCTHCGRKFTKQSSIEEHSLVCDGVRRHRKIKTEYQCKTCKRFYSSDKILRSHQKRCDEKQLKITDYQCSKCNVYYKSAKTLINHTNRGCKKDGKEPAYFCKCCENIFDTVLDLKDHMFKDHDIIEFRCEKCNKVFDNSEGYNAHKSEHKKSKRLFSCEVCSVEFQYLKEVVDHCLNKHSLKPKSIRPYFCDLCQKRFRSSTNLQNHKLYHEGNRSHICSICGKSFITKSDLHNHEITHNDDRNFGCDKCGKAFKTNNNLWTHYRIVHTDPMLWKFVCKLCGKRFPLKSNHDQHFRRHTGQKEFICPLCKKQFASKSELQAHIRCHSNVKRYVCDHCGRDYRKKNSLDIHLTKSHGIGNAKLPVREKKYACHICPGRFYDRNKLARHLCTHSGLKPFACFACDKKFTDKSYMKHHLKTAHNIFEDSVECP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00026300;
- 90% Identity
- iTF_00911341; iTF_00736076; iTF_00459190;
- 80% Identity
- -