Aaln012021.1
Basic Information
- Insect
- Agelastica alni
- Gene Symbol
- -
- Assembly
- GCA_950111635.2
- Location
- OX467709.1:44215766-44218330[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0014 0.35 13.0 2.9 1 23 105 128 105 129 0.94 2 14 0.0051 1.2 11.3 0.3 2 20 143 161 142 163 0.92 3 14 0.059 15 8.0 0.9 2 22 178 198 177 198 0.94 4 14 0.0059 1.4 11.1 0.5 1 21 209 229 209 230 0.95 5 14 0.0022 0.53 12.5 0.4 1 23 241 264 241 264 0.96 6 14 1.3e-05 0.0031 19.5 0.6 1 23 269 291 269 291 0.95 7 14 3.4e-05 0.0083 18.2 3.4 1 23 333 355 333 355 0.96 8 14 1.2e-06 0.00029 22.8 2.4 1 23 361 383 361 383 0.96 9 14 3.5e-06 0.00086 21.3 0.3 3 23 391 412 389 412 0.96 10 14 0.0034 0.84 11.8 2.4 1 23 420 442 420 442 0.96 11 14 0.00019 0.047 15.8 3.1 1 21 448 468 448 470 0.94 12 14 0.0012 0.28 13.3 0.9 1 23 476 499 476 499 0.96 13 14 0.00061 0.15 14.2 3.3 1 23 513 535 513 535 0.98 14 14 0.00023 0.057 15.5 3.4 1 23 541 564 541 564 0.95
Sequence Information
- Coding Sequence
- atgttttcggCTAAATGTTCTatttgctttaaaattaatgatataCTTAAAGAAATATCTCAAACAGACGATGATAGTTTGACGCTCTCCTCAAAGTTAAAGAATGTGGTCCCTGAAGTGgATTGGGGTAATGATTATAAAATATGTGAAATATGTATATTAGAAGTTAGAGCAGCTTatagatttaaagaaaaatgcttaaatataaaaaatgatttaaaagaaGATAATGATAATTTCCCAGACTGTGGGGATCTTAAAATAGATTGTGATTCTGATAATTCTGATAATACAcaagaaataaaacaatatttcatttgcTATAATTGTGGACACAAGAGTACAACAAAAGATGACTTAATAACTCATATTCAAGAAACACACCATAATGATGGTAAGGAATtaccaaaatataaaagaaacacAATGTGTTTTCAGTGTGGTAGAAAATTCACTAAAGAATCTTCCATAAAAGAACATTTAGAAGTTTGCGATGGAGTAAGAAGACATAGaaaagttaaaaatgaaaatcagtGTGAAACTTGTAAAAGGTTTTACAGTACTGAAAAAATCTTGAGAGCCCATCAGAAAAGATGTGATGAAAAACGCTTAAAGAAAACCGATTATCAATGTGCAAAATGCAATATTTACTACAAAAGTGCAAAAACATTAGTAAATCACACCAATAGAGGCTGTAAAAAAGAGGGAAAGGAACCTGCATACTTTTGCAAAAGTTGTGAAAACGTTTTTAACACAGTTGTAGATCTCAAAGACCATATGATAAAAGAACATGACATAGTGGATTTCCAATGTGAAAAATGTGACaaagtttttgaaaatagtGAAGAGTACAATGCTCACAAATCTGATCACAAAAAAGTTAACCCAAAAAGAATATTTTCATGTGAAGTTTGTAACAGTGAGTTTCAGTTTTTAAAAGAGGTAGTTGATCATTGTATTAATGTGCattctttaaaagaaaaatctaTTAGACCTTATTTTTGTGACCTATGCCAAAAGAGATTCCGTTCATcaacaaatttacaaaatcataaGTTATACCATGAAGGAAACAGGACGCATATCTGTAGTATTTGTGGTAAAAGTTTTATAACTAAGAGTGACCTCCATAATCACGAGATAACACATTATGATGATAGAAATTTCGGATGTGATAAATGTGGAAAAGCATTCAAGACTAACAACAACTTATGGACACATTATTTAATCGTCCATACAGATCCTATGTTGTGGAAATTTGTTTGTGAAGTATGTGGGAAAAGATTTCCGTTGAAGTCGAACCATGACCAACACTTCCGAAGACATACAGGTCAGAAGGAATTCATCTGCACATTGTGCAAAAAACAGTTTGCAAGTAAAAGTGAATTACAATCACATGTTAGATGCCACTCAAATGTTAAGAGATACGTTTGTGATCAATGCAATAGAGAATATAGGAAGAAAAACACATTAGATATTCATCTTACTAAAGTACATGGAATAGGAAATGCAAAGATTCCAATAAGAGAGAGAAAATATGCTTGTCACATTTGCCCTAGTAGATTTTATGATAGAATTAAACTGGCTAGACATCTCTGTACCCATTCTGGGTTAAAACCTTTTGCTTGCTTTGCTTGTGAAAAGAAATTTACAGACAAATCATATATGAAACATCATCTGAAAACTGCTCACAACATTTTTGAAGATTCAAGTCTTAAAGATATGCAAATTACTTAA
- Protein Sequence
- MFSAKCSICFKINDILKEISQTDDDSLTLSSKLKNVVPEVDWGNDYKICEICILEVRAAYRFKEKCLNIKNDLKEDNDNFPDCGDLKIDCDSDNSDNTQEIKQYFICYNCGHKSTTKDDLITHIQETHHNDGKELPKYKRNTMCFQCGRKFTKESSIKEHLEVCDGVRRHRKVKNENQCETCKRFYSTEKILRAHQKRCDEKRLKKTDYQCAKCNIYYKSAKTLVNHTNRGCKKEGKEPAYFCKSCENVFNTVVDLKDHMIKEHDIVDFQCEKCDKVFENSEEYNAHKSDHKKVNPKRIFSCEVCNSEFQFLKEVVDHCINVHSLKEKSIRPYFCDLCQKRFRSSTNLQNHKLYHEGNRTHICSICGKSFITKSDLHNHEITHYDDRNFGCDKCGKAFKTNNNLWTHYLIVHTDPMLWKFVCEVCGKRFPLKSNHDQHFRRHTGQKEFICTLCKKQFASKSELQSHVRCHSNVKRYVCDQCNREYRKKNTLDIHLTKVHGIGNAKIPIRERKYACHICPSRFYDRIKLARHLCTHSGLKPFACFACEKKFTDKSYMKHHLKTAHNIFEDSSLKDMQIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01106637; iTF_00437352; iTF_00911341; iTF_00736076; iTF_00459190; iTF_00912462;
- 90% Identity
- -
- 80% Identity
- -