Basic Information

Insect: Galerucella nymphaeae
Gene Symbol: -
Assembly: GCA_963978555.1
Location: OZ021718.1:1911926-1913852[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.18 27 6.6 4.3 1 23 109 132 109 133 0.94

2 15 0.001 0.16 13.6 0.5 2 19 147 164 146 167 0.91

3 15 0.12 18 7.2 2.6 1 21 181 201 181 202 0.93

4 15 0.0026 0.41 12.4 0.9 1 21 213 233 213 234 0.95

5 15 1.3 2.1e+02 3.8 1.6 1 23 245 268 245 268 0.93

6 15 7.6e-05 0.012 17.2 0.6 1 23 273 295 273 295 0.96

7 15 4.9 7.6e+02 2.1 1.7 1 19 302 320 302 325 0.81

8 15 3.8e-05 0.0058 18.2 3.4 1 23 335 357 335 357 0.96

9 15 1.3e-06 0.0002 22.8 2.4 1 23 363 385 363 385 0.96

10 15 3.9e-06 0.0006 21.3 0.3 3 23 393 414 391 414 0.96

11 15 0.0077 1.2 10.9 2.8 1 23 422 444 422 444 0.96

12 15 2.4e-05 0.0038 18.8 1.6 1 21 450 470 450 472 0.94

13 15 0.00024 0.037 15.6 1.3 1 23 478 501 478 501 0.96

14 15 0.00042 0.065 14.9 3.2 1 23 515 537 515 537 0.98

15 15 7.5e-05 0.012 17.2 3.4 1 23 543 566 543 566 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.18	27	6.6	4.3	1	23	109	132	109	133	0.94
2	15	0.001	0.16	13.6	0.5	2	19	147	164	146	167	0.91
3	15	0.12	18	7.2	2.6	1	21	181	201	181	202	0.93
4	15	0.0026	0.41	12.4	0.9	1	21	213	233	213	234	0.95
5	15	1.3	2.1e+02	3.8	1.6	1	23	245	268	245	268	0.93
6	15	7.6e-05	0.012	17.2	0.6	1	23	273	295	273	295	0.96
7	15	4.9	7.6e+02	2.1	1.7	1	19	302	320	302	325	0.81
8	15	3.8e-05	0.0058	18.2	3.4	1	23	335	357	335	357	0.96
9	15	1.3e-06	0.0002	22.8	2.4	1	23	363	385	363	385	0.96
10	15	3.9e-06	0.0006	21.3	0.3	3	23	393	414	391	414	0.96
11	15	0.0077	1.2	10.9	2.8	1	23	422	444	422	444	0.96
12	15	2.4e-05	0.0038	18.8	1.6	1	21	450	470	450	472	0.94
13	15	0.00024	0.037	15.6	1.3	1	23	478	501	478	501	0.96
14	15	0.00042	0.065	14.9	3.2	1	23	515	537	515	537	0.98
15	15	7.5e-05	0.012	17.2	3.4	1	23	543	566	543	566	0.96

Sequence Information

Coding Sequence: ATGTTCTCAGAAAAGTGTTCAATTTGTTTTACATTTAACGATGTacttaaagaaatttctcaaACTGATGGTGATAGCCtaactttttcttttaaattgcAAGCTGTAGTTCCTGAAGTGgaaTGGCTTGCTGGTTACAAAATTTGTGAAACGTGTGTATTTGAAGTTAAAACAGCATACACATTTAGAACAAAATGCCTAGATATAAAGAATAACTTGAAAGATGAAAGCTTAGAAAAAATAGCAGAATATGATTACATTAAAGAAGATTATCATTCAGATGGTTCAGATCTTGAACAGGATTCCCAAGAAACAAAGCAATACTTTATATGTTACCATTGTGGGCATAACAGTTTAACAAAAGATGATTTAATAAAACACATTCAAGAAACACATCATCATGAAGATAAAGAACCACCAAAGTATAAGAGAAATACCATGTGTTCTCACTGTGGTAGGAAGTTTACAAAACAATCATCAATAGAAGAACATTCACTTGTGTGTGATGGAGTAAGGAGGCACAGAAAAATTAAAACTGAGTATCAGTGCAAGACATGTAAACGTTTCTACAGTTCAGACAAAATATTAAGATCTCATCAAAAAAGATGTGatgaaaaacaattaaaaatcaCAGATTACCAATGCTCAAAATGTAATGTTTATTATAAAAGTGCAAAAACTCTGATAAATCATACAAATCGAGGTTGTAAAAAAGATGGCAAAGAACCTGCCTACTTTTGTAAGTGTTGCGAAAATATTTTCGACACAGTATTGGATCTCAAAGATCATATGTTAAAGGATCACGACATAATCGAGTTTAGgtgtgaaaaatgtgaaaaggtGTTCGATAACAGTGAAGCATACAATGCACATAAATCTGAACATAAGAAATCAAAACGATTGTTTTCCTGTGAAGTGTGTAGTGAAGAATTTCAGTATTTAAAGGAAGTGGTGGATCATTGCTTGAAAAAACATTCTCTAAAGCCAAAATCAATTCGACCCTACTTCTGTGACTTGTGTCAAAAAAGGTTTCGTTCATCCACAAATTTACAAAATCACAAACTCTACCATGAAGGTAATAGATCTCATATTTGCAGTATTTGTGGCAAAAGTTTCATAACAAAGAGCGACCTTCATAATCATGAAATAACTCATAATGATGACAGAAATTTCGGATGCGATAAATGTGGCAAGGCATTCAAGACAAATAACAATCTGTGGACACATTATCTAATAGTTCACACTGATCCCATATTATGGAAATTTGTTTGTGAATTATGTGGAAAAAGATTCCCGTTGAAATCAAATCATGATCAACATTTTCGTAGACATACAGGACAGAAAGAATTCATCTGTCCACTATGCAAAAAACAATTTGCCAGTAAAAGTGAACTCCAAGCTCACGTTAGATGTCATTCGAATGTGAAAAGGTATGTTTGTGACCACTGTGGAAGAGATTATAGAAAGAAAAACAGTCTTGACATTCATCTTACTAAAGCACATGGTATTGGCAATGCAAAACTTCCAGTAAGAGAGAAAAAATATGCTTGTCATATTTGTCCTGGCAGGTTTTATGACAGGAATAAATTGGCCAGGCATTTGTGCACACATTCTGGATTAAAACCGTTTGCCTGCTTTGCGTGTGATAAAAAATTTACCGACAAATCGTACATGAAGCACCATCTAAAAACAgcccacaatatttttgaagatTCTGGTTCAAAAGACCCTAACATCACCTAA
Protein Sequence: MFSEKCSICFTFNDVLKEISQTDGDSLTFSFKLQAVVPEVEWLAGYKICETCVFEVKTAYTFRTKCLDIKNNLKDESLEKIAEYDYIKEDYHSDGSDLEQDSQETKQYFICYHCGHNSLTKDDLIKHIQETHHHEDKEPPKYKRNTMCSHCGRKFTKQSSIEEHSLVCDGVRRHRKIKTEYQCKTCKRFYSSDKILRSHQKRCDEKQLKITDYQCSKCNVYYKSAKTLINHTNRGCKKDGKEPAYFCKCCENIFDTVLDLKDHMLKDHDIIEFRCEKCEKVFDNSEAYNAHKSEHKKSKRLFSCEVCSEEFQYLKEVVDHCLKKHSLKPKSIRPYFCDLCQKRFRSSTNLQNHKLYHEGNRSHICSICGKSFITKSDLHNHEITHNDDRNFGCDKCGKAFKTNNNLWTHYLIVHTDPILWKFVCELCGKRFPLKSNHDQHFRRHTGQKEFICPLCKKQFASKSELQAHVRCHSNVKRYVCDHCGRDYRKKNSLDIHLTKAHGIGNAKLPVREKKYACHICPGRFYDRNKLARHLCTHSGLKPFACFACDKKFTDKSYMKHHLKTAHNIFEDSGSKDPNIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00026300;
90% Identity: iTF_00912462;
80% Identity: -