Lcap016976.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lochmaea capreae
Gene Symbol
nfxl1
Assembly
GCA_949126875.1
Location
OX421400.1:6329156-6332364[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 2 5.8e+04 -7.8 5.6 15 19 161 165 160 165 0.81
2 19 0.12 3.5e+03 -0.2 0.4 4 10 196 202 195 202 0.95
3 19 4.7e-08 0.0014 20.3 16.4 1 19 210 227 210 227 0.99
4 19 2 5.8e+04 -4.1 0.9 1 4 236 239 236 239 0.95
5 19 0.35 1e+04 -1.7 0.3 6 10 253 257 252 259 0.89
6 19 1.7e-06 0.049 15.3 15.8 1 19 263 281 257 281 0.89
7 19 1.4 3.9e+04 -3.6 1.0 6 10 306 310 305 310 0.88
8 19 2.3e-08 0.00066 21.3 11.8 1 19 316 334 316 334 0.99
9 19 3.7e-06 0.11 14.2 12.0 1 18 369 386 369 387 0.97
10 19 0.098 2.8e+03 0.1 0.9 1 5 396 400 396 405 0.90
11 19 3.8e-05 1.1 11.0 15.6 3 18 423 438 421 439 0.91
12 19 1.5e-10 4.3e-06 28.3 12.8 1 18 448 465 448 466 0.97
13 19 0.83 2.4e+04 -2.9 1.1 5 10 494 499 494 499 0.92
14 19 0.00019 5.5 8.7 5.2 8 19 513 524 512 524 0.88
15 19 0.078 2.3e+03 0.4 5.4 4 12 536 544 534 544 0.85
16 19 2 5.8e+04 -6.9 4.5 14 18 572 576 572 576 0.86
17 19 0.0045 1.3e+02 4.3 5.8 1 11 613 623 607 627 0.87
18 19 1.2e-06 0.036 15.7 19.1 3 19 654 670 653 670 0.92
19 19 1.3e-06 0.039 15.6 13.2 1 18 713 732 713 733 0.86

Sequence Information

Coding Sequence
atgaataGCCAAAGTAAGTCTAAAAATCCgtggaataaaaatattcaaaatccaCCAAAAAGAAATCAGAATAAAAATTTGCCGACACCTGGTGAAGTTAAATTTAAAGAAGCTCATGCAAAACTACAAGCGGCTGTAAAAAAACATGTTACTGAATACGAGTCTTCATCAGATGAAGAAGAATTGGAATCGACAACCTTAATAGattctattttaaaaaactacaGAATTAATAACGGAGAAAATGATAATATTGATAAGACACAAACTTTTTTGCAAGAAACGTTTTTATCTGGGGCAGCAACCTGCTTAATTTGTATTTCTAGAGTTAAGAAAGAAGACCAGATATGGAGTTGTGTCAATTGTTATGGTTATTTTCACCTTATGTGTGTTCAGAGATGGTCAAAAGACACAATAGCTCAACTAAAAAATGCcaatcaggaacaaattatTGTTAAGCAGCATAAAATATGTTGGTGTTGTCCAAAATGCCGTCATGAATATGACACCATTGACATTCCTACAAAATATGTGTGTTTTTGTACCAAAACAGAAAATCCAAAATATGATCCATACATTGCTCCTCATTCTTGTGGTCAAATTTGTAAGAAACCTTTAAAACCCAAATGTGGACATAACTGCTTACTTCTATGTCACCCAGGACCATGTCCTCCTTGTCCTGTAACTGTGAATGTATCATGTTATTGTGGGTCCCACCCTGCAAGAAGTCAGAGATGCAGTAAAAAGGAATGGTCCTGTAATGAAGTCTGTGGGAAAACATTATCCTGCGTCAAACATTCTTGTCCAAACCTTTGCCATCCAGGTGAATGTTCTCCATGTCCAAAGAAAAGTATCCAAAGATGCATTTGTAAATCTCAACAGAAACTTTGTGAATGTGCTAGTCCTTTATGGCAATGTGATAAGGTGTGTAATAAGGCTTTAGAATGTGGAAATCATAAATGTCAAGAAAAATGCCATATTGGAGTTTGTGATATATGTCCCTTAACAAAAGCTCGAACATGTCCTTGTGGTAAAACATCATACCAGCTTCCTTGCACACAAGAGACTCCTACATGCTTGGATACTTGTGAAAAGCTCCTCGATTGTGGTATACACCAGTGCAATTTGAAATGTCACAGGGAAAAATGTGGACCTtgCCTTGAAACAGTAGAAAAATATTGTAGATGTGGACAGCATACCAAAGAAGTTCAATGCTACAAACCATATTTATGTGAAGTTAAATGTAAGCAAATGAAGGACTGTTATAAACATCCTTGTAATAGAAAATGTTGTGATGGTAACTGCCCACCATGTGAAAAACCTTGtggaaaaactttaaattgtgGTAACCACAAATGTAACTCAATATGTCACAGAGGTCCTTGCTATCCCTGCAATCAAACTGATGATGTATCTTGTAGATGTGGAACTACAAAAATTGCCGTACCTTGTGGTCGTAAAAGTAAAACCAAACCTCCAAAATGTCCCAAACTGTGTTTGATTCCTCCTGACTGCCATCATGAAAAACGAGATCAACACAAATGTCATTTTGGCGATTGTCCTTCATGCAAGCAGATTTGTAACAAAGTGCACAATAAATGTACCCATTTATGTCCTGCCCTTTGCCATACAGCTGTTCTTGTTAAAATTGAAGGACAAAAGGCTTCGATGccttgggaacaagtaaaaccaCAAGTTGTAAGAAAAGAGTTACCATGTCCTGACTGTGTTATTAAAGTTCCTGTCACTTGTTTAGGTGAGCACGAAACTTCCGATTGGTCTTGTTATTTGGCCAAACCTTCTAGTTGTCACCGTCTATGTGGTAGAATTCTTAATTGTAATAATCATACCTGCAACTTACAATGTCATGCAGTTGAAGGAGCTCCTGACAAAATTCAGTCCGGAGTCAATTGCGAACAATGTGAGGGTGGTTGTGATAAAAATCGCCCGGAAGGTTGTACCCACAAATGTCCCAAACCTTGTCATCCTGGAAATTGTCCTCCTTGTAAAGTGATGATAAGAATAAGATGTTATTGCGGTCTTAACCAACCATACGTTTCTTGTGCTGATTGGCTAAATGAAGACAAGAAAGCAGAGCTGCAAACGTGTGGCAACCAATGTCCAAAGAATtatgaATGTGGACACAGATGTAAGGCAAACTGTCATCCGGGACCTTGCCCTAACGCCAATCaatgcaaaaagaaaataaaagtaacATGTAAATGCAAAAGAATCAAAAAGGAATTTTCATGCGAAACTGTTCGAAAAAACGAAGCCGAAGTACCTTGCGATGAAATTTGTCgcattaaaaaagaagaaaataaaacacTAAGAGATGCAGCTGAAGAGCAAAAAAGGCAGGAAGAGGAAGCGAGAAATCGAAAAGAGCTGGAAAAGTATCAAAAGATGTTTGAAGGAAAGAAGAAAAATAGGGAGAGGAGACGGTGTGAAGATGAAGTTGAGGATGGGATTTTAAGACGATATTGGTATATTATAGGAGCCGTTTTGTTTCTTCTTATTTCTGTAgcgttgtattttatttttatgtga
Protein Sequence
MNSQSKSKNPWNKNIQNPPKRNQNKNLPTPGEVKFKEAHAKLQAAVKKHVTEYESSSDEEELESTTLIDSILKNYRINNGENDNIDKTQTFLQETFLSGAATCLICISRVKKEDQIWSCVNCYGYFHLMCVQRWSKDTIAQLKNANQEQIIVKQHKICWCCPKCRHEYDTIDIPTKYVCFCTKTENPKYDPYIAPHSCGQICKKPLKPKCGHNCLLLCHPGPCPPCPVTVNVSCYCGSHPARSQRCSKKEWSCNEVCGKTLSCVKHSCPNLCHPGECSPCPKKSIQRCICKSQQKLCECASPLWQCDKVCNKALECGNHKCQEKCHIGVCDICPLTKARTCPCGKTSYQLPCTQETPTCLDTCEKLLDCGIHQCNLKCHREKCGPCLETVEKYCRCGQHTKEVQCYKPYLCEVKCKQMKDCYKHPCNRKCCDGNCPPCEKPCGKTLNCGNHKCNSICHRGPCYPCNQTDDVSCRCGTTKIAVPCGRKSKTKPPKCPKLCLIPPDCHHEKRDQHKCHFGDCPSCKQICNKVHNKCTHLCPALCHTAVLVKIEGQKASMPWEQVKPQVVRKELPCPDCVIKVPVTCLGEHETSDWSCYLAKPSSCHRLCGRILNCNNHTCNLQCHAVEGAPDKIQSGVNCEQCEGGCDKNRPEGCTHKCPKPCHPGNCPPCKVMIRIRCYCGLNQPYVSCADWLNEDKKAELQTCGNQCPKNYECGHRCKANCHPGPCPNANQCKKKIKVTCKCKRIKKEFSCETVRKNEAEVPCDEICRIKKEENKTLRDAAEEQKRQEEEARNRKELEKYQKMFEGKKKNRERRRCEDEVEDGILRRYWYIIGAVLFLLISVALYFIFM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01106860;
90% Identity
iTF_00736295; iTF_00912653;
80% Identity
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