Lcra040424.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lochmaea crataegi
Gene Symbol
nfxl1
Assembly
GCA_947563755.1
Location
OX387427.1:2299503-2302641[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1 5.5e+04 -7.8 5.6 15 19 162 166 161 166 0.81
2 18 0.061 3.3e+03 -0.2 0.4 4 10 197 203 196 203 0.95
3 18 4.8e-08 0.0026 19.3 16.0 1 19 211 228 211 228 0.99
4 18 1 5.5e+04 -4.1 0.9 1 4 237 240 237 240 0.95
5 18 2.5e-07 0.014 17.0 13.9 1 19 264 282 258 282 0.91
6 18 0.68 3.7e+04 -3.6 1.0 6 10 307 311 306 311 0.88
7 18 3.1e-09 0.00017 23.1 10.3 1 19 317 335 317 335 0.99
8 18 7.3e-06 0.4 12.3 10.2 1 18 370 387 370 388 0.97
9 18 0.049 2.7e+03 0.1 0.9 1 5 397 401 397 406 0.90
10 18 8.8e-05 4.8 8.8 14.4 3 18 424 439 422 440 0.91
11 18 7.4e-11 4e-06 28.3 12.8 1 18 449 466 449 467 0.97
12 18 0.41 2.3e+04 -2.9 1.1 5 10 495 500 495 500 0.92
13 18 9.5e-05 5.2 8.7 5.2 8 19 514 525 513 525 0.88
14 18 0.011 5.9e+02 2.2 4.6 1 12 535 545 535 545 0.88
15 18 1 5.5e+04 -6.9 4.5 14 18 573 577 573 577 0.86
16 18 0.003 1.6e+02 4.0 6.1 1 11 614 624 608 628 0.87
17 18 1e-05 0.56 11.8 16.7 3 19 655 671 654 671 0.92
18 18 3.8e-06 0.21 13.2 14.2 1 18 714 733 714 734 0.86

Sequence Information

Coding Sequence
ATGAATAGCCAAACTAAGTCAAAAAATCCATGGAATAAAAATATTCAAAATCCACCAAAAAGAAATCAGAATAAAAATTTGCCGACACCTGGTGAAGTTAAATTTAAAGAAGCTCATGCGAAATTGCAAGCGGCTGTAAAAAAACATGTTACAGAATACGAGTCTTCATCAGATGAAGAAGAATTGGAATCGGCAACCTTAATAGATTCTATTTTAAAAAACTACAGAATTACTAGTGGAGAAGATGATAATATCGATAAGACGCAAACTTTTTTACAAGAAACGTTTTTGTCTGGGGCAGCGACCTGTTTAATTTGTATTTCTAGAGTTAGAAAAGAAGATCAGGTAAATACGAATTGTGTCAACTGTTATGGTTATTTTCACCTTATGTGTGTTCAGAGATGGTCAAAAGACACAATAGCTCAACTAAAAAATGCCAATCAGGAACAAATTATTGTTAAGCAGTATAAAATATGTTGGTGTTGTCCAAAATGCCGTCATGAATATGAAACCATCGACATTCCTACAAAATATGTGTGTTTTTGTACCAAAACAGAAAATCCAAAATATGATCCCTACATTGCTCCCCATTCTTGCGGTCAAATTTGTAAGAAACCTTTAAAACCGAAATGTGGACATGCCTGCTTACTTCTTTGTCACCCAGGACCCTGTCCGCCTTGTCCTGTAACTGTGAATGTATCATGTTATTGTGGGTCCCACCCTGCAAGAAGTCAGAGATGCAGTAAAAAAGAATGGTCCTGTAATGATGTCTGTGGGAAAATATTATCCTGCAACAAACATTATTGTCCAAACCTTTGCCATCCAGGTGAATGTTCACCCTGTCCAAAGAAAAGTATACAGAGATGCATTTGTAAATCTCAACAGAAACTTTGTGAATGTGCTAGTCCTATATGGCAATGTGATAAGGTTTGTAATAAGGCTTTAGAATGTGGAAACCATAAATGTCAAGAAATATGCCATATTGGAGTTTGCGATATCTGTCCCTTAACAAAAGCTCGAACATGTCCTTGTGGTAAAACATCGTACCAGCTTCCTTGCACACAAGAGACTCCTACATGCTTAGATACTTGTGAAAAGCTCCTCGATTGTGGTATACACCAGTGCAATTTGAAATGTCACAGAGAAAAATGTGGAGCGTGCCTTGAAACAGTAGAAAAATACTGTAGATGTGGACAGCATACCAAAGAAGTTCAATGCTACAAACCATATTTATGTGAAGTTAAATGTAAGCAAATGAAGGACTGTTATAAACATCCGTGTAATAGAAAATGTTGTGATGGTAATTGCTCGCCATGTGAAAAACCTTGTGGAAAAACTTTAAATTGTGGTAACCACAAATGTAACTCAATATGTCACAGAGGTCCTTGCTATCCCTGCAATCAAACCGATGATGTATCTTGTAGATGTGGAACTACAAAGATTGCCGTACCTTGTGGACGTAAAAGTAAAACCAAACCTCCAAAATGTCCCAAACTGTGTTTGATTCCTCCCGACTGCCATCATGAAAAACGAGATCAACACAAATGTCATTTTGGTGATTGTCCTTCTTGTAAGCAGATTTGTAACAAAGTGCACAATAAATGTTCCCATTTATGTCCCGCTCTTTGCCATACCGCTGTTCTTGTTAAAATTGAAGGTCAAAAGGCTTCGATGCCTTGGGAACAAGTAAAACCACAAGTAGTAAGGAAAGAGTTACCATGTCCTGACTGTGTTGTCAAAGTTCCTGTCACTTGTTTAGGTGAGCACGAAACTTCCGATTGGTCTTGTTATTTGGCAAAACCATCTAGTTGTCATCGTCCTTGTGGTAGAATTCTAAATTGTAATAATCATACCTGCAACTTACAATGTCATGCAGTTGAAGGTGCTCCTAACAAAATTCAGTCCGGACTCAATTGCGAACAATGCGAAGGAAGTTGTAATAAAGATCGACCAGAAGGTTGTACTCACAAATGTCCCAAACCTTGTCATCCTGGAATTTGTTCTCCTTGTAAAGTGATGATTAGAATAAGGTGTTATTGCGGTCTTAACCAACCATACGTTTCTTGTGCTGATTGGCTAAACGAAGACAAGAAAGCAGAGCTGCAAACGTGTGGCAACCAATGTCCAAAGAATTATGAATGTGGACATCGATGTAAGACAAACTGTCATCCGGGACCATGTCCTAACGCCAAACAATGCAAAAAGAAAATGAAAGTAACATGTAAATGCAAAAGGATCAAAAAGGAATTTTCGTGCGAAACTGTTCGAAAAAACGAAGCATTCGTACCTTGCGATGAAATTTGTCGCGTCAAAAAAGAAGAAAATAAAAAACTAAGAGACGCAGCTGAAGAGCAAAAAAGACAGGAAGAGGAAGCGAAAAATCAAAAAGAGTTGGAAAAGTATCAAAAGATGTTTGAAGGAAAGAAGAAAAATAGGGAGAGGAGACGGTGTGAAGATGAAGTTGAGGATGGGATTTTAAGACGATATTGGTACATTATAGGAGCTGTTTTGTTTCTTCTTATTTCTGTAGCGTTGTATTTTATTTTTATGTGA
Protein Sequence
MNSQTKSKNPWNKNIQNPPKRNQNKNLPTPGEVKFKEAHAKLQAAVKKHVTEYESSSDEEELESATLIDSILKNYRITSGEDDNIDKTQTFLQETFLSGAATCLICISRVRKEDQVNTNCVNCYGYFHLMCVQRWSKDTIAQLKNANQEQIIVKQYKICWCCPKCRHEYETIDIPTKYVCFCTKTENPKYDPYIAPHSCGQICKKPLKPKCGHACLLLCHPGPCPPCPVTVNVSCYCGSHPARSQRCSKKEWSCNDVCGKILSCNKHYCPNLCHPGECSPCPKKSIQRCICKSQQKLCECASPIWQCDKVCNKALECGNHKCQEICHIGVCDICPLTKARTCPCGKTSYQLPCTQETPTCLDTCEKLLDCGIHQCNLKCHREKCGACLETVEKYCRCGQHTKEVQCYKPYLCEVKCKQMKDCYKHPCNRKCCDGNCSPCEKPCGKTLNCGNHKCNSICHRGPCYPCNQTDDVSCRCGTTKIAVPCGRKSKTKPPKCPKLCLIPPDCHHEKRDQHKCHFGDCPSCKQICNKVHNKCSHLCPALCHTAVLVKIEGQKASMPWEQVKPQVVRKELPCPDCVVKVPVTCLGEHETSDWSCYLAKPSSCHRPCGRILNCNNHTCNLQCHAVEGAPNKIQSGLNCEQCEGSCNKDRPEGCTHKCPKPCHPGICSPCKVMIRIRCYCGLNQPYVSCADWLNEDKKAELQTCGNQCPKNYECGHRCKTNCHPGPCPNAKQCKKKMKVTCKCKRIKKEFSCETVRKNEAFVPCDEICRVKKEENKKLRDAAEEQKRQEEEAKNQKELEKYQKMFEGKKKNRERRRCEDEVEDGILRRYWYIIGAVLFLLISVALYFIFM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01106860;
90% Identity
iTF_00911573;
80% Identity
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