Gnym013435.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Galerucella nymphaeae
Gene Symbol
nfxl1
Assembly
GCA_963978555.1
Location
OZ021707.1:3749726-3752711[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 2 4.1e+04 -7.8 5.6 15 19 161 165 160 165 0.81
2 19 0.12 2.5e+03 -0.2 0.4 4 10 196 202 195 202 0.95
3 19 4.7e-08 0.00097 20.3 16.4 1 19 210 227 210 227 0.99
4 19 2 4.1e+04 -4.1 0.9 1 4 236 239 236 239 0.95
5 19 1.2e-06 0.024 15.8 15.6 1 19 263 281 257 281 0.91
6 19 1.4 2.8e+04 -3.6 1.0 6 10 306 310 305 310 0.88
7 19 9.9e-09 0.0002 22.4 12.1 1 19 316 334 316 334 0.99
8 19 4.2e-05 0.86 10.8 10.0 1 18 369 386 369 387 0.96
9 19 0.098 2e+03 0.1 0.9 1 5 396 400 396 405 0.90
10 19 3.8e-05 0.79 11.0 15.6 3 18 423 438 421 439 0.91
11 19 1.5e-10 3e-06 28.3 12.8 1 18 448 465 448 466 0.97
12 19 0.83 1.7e+04 -2.9 1.1 5 10 494 499 494 499 0.92
13 19 0.00019 3.9 8.7 5.2 8 19 513 524 512 524 0.88
14 19 0.0078 1.6e+02 3.6 4.2 1 12 534 544 534 544 0.95
15 19 2 4.1e+04 -6.9 4.5 14 18 572 576 572 576 0.86
16 19 0.006 1.2e+02 4.0 6.1 1 11 613 623 607 627 0.87
17 19 2 4.1e+04 -4.7 2.0 11 12 641 642 637 646 0.48
18 19 1.2e-06 0.025 15.7 19.1 3 19 654 670 653 670 0.92
19 19 1e-05 0.21 12.8 12.9 1 16 713 727 713 733 0.88

Sequence Information

Coding Sequence
ATGAATAGCCAAACTAAGCCTAAAAATCCatggaataaaaatattcaaacccCACCAAAAAGGAATCAGAATAAAAATTTGCCGACACCTGGTGAAGTTAAATTTAAAGAGGCCCATGCAAAACTGCAAGCAGCTGTAAAAAAACATGTTACTGAATACGAGTCTTCATCAGATGAAGAAGAATTGGAATCGACAACCTTCATAGattctattttaaaaaactACAGAATTAATAATGGAGAAAGTGATAATATTGATAAGACTCAAACTTTTTTGCAAGAAACTTTTTTATCTGGGGCAGCAACCTGCTTAATTTGTATTTCTAGAGTTAGAAAAGAAGATCAGATATGGAGTTGTGTCAACTGTTATGGTTATTTTCACCTTATGTGTGTTCAGAGATGGTCAAAAGACACAATTGCTCAACTAAAAAATGCCAATCAGGAACAAATTATTGTTAAGCAGCATAAAATATGTTGGTGTTGTCCAAAATGCCGTCATGAATATGAAACCATTGACATTCCTACAAAATATGTGTGTTTTTGTACCAAAACAGAAAATCCAAAATATGATCCATACATTGCTCCTCACTCTTGCGGTCAAATTTGTAAGAAGCCTTTAAAACCCAAGTGTGGACATAATTGCTTACTTCTATGTCACCCAGGACCATGTCCTCCCTGTCCTGTAACTGTGAATGTATCCTGCTATTGTGGGTCCCACCCTGCAAGAAGTCAGAGATGTAGTAACAAAGAATGGTCCTGTAATAATGTCTGTGGGAAAATATTATCCTGCAACAAACATTCTTGTCCAAACCTTTGCCATCCAGGTGAATGTTCTCCTTGTCCAAAGAAAAGTATACAAAGATGCATTTGTAAATCTCAGCAGAAACTTTGTGAATGTGCTAATCCTGTATGGCAATGTGATAAGGTGTGTAATAAGGCTTTGGAATGTGGAAATCATAAATGCCAAGAAAAATGCCATATTGGAGTTTGTGATGTCTGTCCCTTAACAAAAGCTAGAACATGTCCTTGTGGTAAAACACCATTCCAGCTTCCTTGCACACAAGAGACTCCTACGTGCTTAGATACTTGTGAAAAGCTCCTTGATTGCGGTATACACCAGTGCAACTTGAAATGTCACAGGGAAAAATGTGGACTGtgtcTTGAAACGGTAGAAAAATACTGTAGATGCGGACAGCATACTAAAGAAGTTCAATGCTACAAACCATATTTATGCGAAGTTAAATGTAAGCAAATGAAAGACTGTTATAAACATCCATGTAATAGAAAATGTTGCGATGGCAACTGCCCGCCATGTGAAAAGCCTTGCGGAAAAACTTTGAATTGCGGTAACCACAAATGTAACTCGATATGTCACAGAGGTCCTTGCTATCCCTGCAATCAAACCGATGATGTATCTTGTAGATGTGGAACTACAAAAATTGCTGTACCTTGTGGTCGTAAAGGTAAAAccaaaccaccaaaatgtcccAAACTGTGTTTgaTTCCACCCGACTGCCATCATGAAAAACGAGATCAACACAAATGTCATTTTGGCGATTGTCCTTCATGCAAGCAAATTTGTAACAAAGTGCATAATAAATGCGGTCATTTATGTCCTGCTTTTTGCCATACGGCTGTTCTTGTTAAAATTGAAGGTCAAAAGGCTTCGATGCCTTGGGAACAAGTAAAACCACAAGTAGTAAGGAAAGAGTTACCGTGTCCTGACTGTGTTGTTAAAGTTCCCGTCACTTGTTTGgGTGAACATGAAACTTCCGATTGGCCTTGTTATTTGGCAAAACCTTCTAGTTGTCATCGTCCTTGCGGTAGAATTCTGAACTGTAATAATCATACCTGCAACTTACAATGTCATGCAGTTGAAGGAGCTCCTGATAAAATTCAATCCGGAGTCAATTGCGAACAATGTGAAGGAAGTTGTGATAAAGATCGACCAGAAGGATGCACTCACAAGTGTCCCAAACCTTGTCATCCTGGAAATTGTCCTCCTTGCAAAGTAATGATAAGAATAAGATGTTATTGCGGTCTTAACCAACCATACGTTTCTTGTGCCGATTGGCTAAACGAAGACAAAAAAGCAGAGCTGCAAACGTGTGGCAACCAATGTCCAAAGAATTATGAATGCGGACATAGATGTAGGGAAAACTGTCATCCAGGACCCTGTTCGACGTCCGATCAATGCAAAAAGAAAATGAAAGTAACGTGTAAATGTAAAAGGATCAAAAAGGAGTTTTCGTGCGAAAGTGTTCGAAGAAACGAAGCGGACGTACCGTGCGATGAAATTTGTCgcattaaaaaagaagaaaataaaaaactgaGAGACGCAGCTGAAGAGCAAAAGCGACAGGAAGAGGAAGCGAAAAATCGAAAAGAATTGGAAAAGTATCAAAAGATGTTTGAAGGAAAGAAGAAAAATAGGGAGAGGAAACGGTTTGAAGATAAAAATGAGGATGGGATTTTAAGACAATATTGGTATATTATAGGAGCTGTTTTGTTCCTTATTATATCTGTAGTCTTGTATTTTATGTTTATGTGA
Protein Sequence
MNSQTKPKNPWNKNIQTPPKRNQNKNLPTPGEVKFKEAHAKLQAAVKKHVTEYESSSDEEELESTTFIDSILKNYRINNGESDNIDKTQTFLQETFLSGAATCLICISRVRKEDQIWSCVNCYGYFHLMCVQRWSKDTIAQLKNANQEQIIVKQHKICWCCPKCRHEYETIDIPTKYVCFCTKTENPKYDPYIAPHSCGQICKKPLKPKCGHNCLLLCHPGPCPPCPVTVNVSCYCGSHPARSQRCSNKEWSCNNVCGKILSCNKHSCPNLCHPGECSPCPKKSIQRCICKSQQKLCECANPVWQCDKVCNKALECGNHKCQEKCHIGVCDVCPLTKARTCPCGKTPFQLPCTQETPTCLDTCEKLLDCGIHQCNLKCHREKCGLCLETVEKYCRCGQHTKEVQCYKPYLCEVKCKQMKDCYKHPCNRKCCDGNCPPCEKPCGKTLNCGNHKCNSICHRGPCYPCNQTDDVSCRCGTTKIAVPCGRKGKTKPPKCPKLCLIPPDCHHEKRDQHKCHFGDCPSCKQICNKVHNKCGHLCPAFCHTAVLVKIEGQKASMPWEQVKPQVVRKELPCPDCVVKVPVTCLGEHETSDWPCYLAKPSSCHRPCGRILNCNNHTCNLQCHAVEGAPDKIQSGVNCEQCEGSCDKDRPEGCTHKCPKPCHPGNCPPCKVMIRIRCYCGLNQPYVSCADWLNEDKKAELQTCGNQCPKNYECGHRCRENCHPGPCSTSDQCKKKMKVTCKCKRIKKEFSCESVRRNEADVPCDEICRIKKEENKKLRDAAEEQKRQEEEAKNRKELEKYQKMFEGKKKNRERKRFEDKNEDGILRQYWYIIGAVLFLIISVVLYFMFM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01106860;
90% Identity
iTF_00911573;
80% Identity
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