Lcap039849.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lochmaea capreae
Gene Symbol
RNF216
Assembly
GCA_949126875.1
Location
OX421407.1:23623046-23636221[-]

Transcription Factor Domain

TF Family
zf-LITAF-like
Domain
zf-LITAF-like domain
PFAM
PF10601
TF Group
Zinc-Coordinating Group
Description
Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 2.3e-12 4.4e-08 34.8 1.2 1 38 49 86 49 90 0.95
2 4 3 5.8e+04 -7.6 6.7 48 56 416 420 396 430 0.50
3 4 3 5.8e+04 -6.3 5.6 48 62 513 520 486 531 0.57
4 4 3 5.8e+04 -6.5 6.4 18 22 564 568 549 607 0.50

Sequence Information

Coding Sequence
atggAAAAATCATCAAACCCTCCACCTTATTCACCGCCCCAAGGTGGATTTCAACCTCCTCCTCAAGCTGGTTTCCATCCTCCTCCTCAACATGAACCACAAACAGttattGTGACTCACACAGTGGCACAGGTACCAGTGGGACCTTCTCCAACTTCGACAACATGCCCATCCTGCCATGCTCAGATAGTTACATCCGTAGAAGTTGAAACAACTACGAAAACACATTTGTTTGCTCTGCTGTTATGTCTTTTTGGGGACATGTTTCCTAGAACAGAGGAACAAGTTATTAATAATGTAATTCAATTAGTAGAGGAAAATAGTCCTTTTGATTCATTTGAACAGAAGATCGAAAATATCATCAATATGTTGTGCACTGAAGGAGCTCAAGGGCCAATGCCTGAAATATCAACTCCCCAAAATAATCTGTTCACAAGTTTGGTTTCTATTTATGGTCATATAGATGAAGATTATTTGCATACATATGTAAATGACAAAcctgataattttaatattgaagatGCAATTGAAGAATTATCATTATGTGatttaccaaaaaaaacttCTCATTCCTCAATTGATCCAACAACAATTTGGGAGCAGCTTCGGTCAGCTCTACCAAATGCTGATCCATCATATTTGAAAAAGCAAGCTAGTAAATTTGCCACACTTCCTACTAGagagttgaatatttttttacaaaatgctATTGAAAACAATGACTATCCATCAATGCAAGAATATATAAAGAACAAAAAACACAACGACGAAGTGGCAATGTATACAGACAATTTTGATATAAACAAGTTTCTAGAAATCATTCCAAATGCAGTTGATAAATTCAGTGATCCGAATAGACCTTTGGTTTTGAACGAAAATTCCACTGAAAGTGATCAAATTTATGCCATGCACTTTTTATACAATCAATTTAGATATATAAGAtgtaaatacatagatatcttgTTTAAACGAGAAAGGAAAAATTTAGTGGCTGTATGTGATAAactagaaaaattaaataatagtttAGTCAAACCTAGGAGTATTAAGCATGGAGAAGTTTCGGAAAACATTGGACTTTTGCAAGTGACAACTTACTTGAAATATcgtaaattgattaaaaaaaaactaaagttGAAAGATGAAAAATACAAAAGTGCCAAAGAAGAAGCAAAGAAATATGGTCTTTTAGAAACCTGTCAGTGTTGTTTTGAAGACGAATTAATACCGGAAGAATGTTACTTTTGTATGAAGGGTTGCGTTTTTTGCAAAGGATGTATTCAAAAAGGTGTCGAGGTCGGTATTGGAAAAGGACATCTTAAATTTCCGTGCATGGCTAGCTGCAACTCTGAATTTAATTTACAGACCTTACAAATGGTTTTACCAAAACGAATGTTTGAGCGACTTGCTCAACAAATTGCCagtgaagaaataaaaaaggcCAACGTGGACGGTTTGGAAATCTGTCCGTTCTGTGATTTCGCCATGGTGCTACCAGAACATGAAAAGATATTTAAATGCATCAACGAAGAATGTTTAATAGAATCTTGCCGACAGTGTCGTCACAAATCACATATTCCTTTGAAATGTAATGAGATTGAATATGACGAAGACGTGAGAAGAAGaacttttatagaaaataaaatgaccGATGCGCTGACTAGAACTTGCTACCAATGTAAAAAGTCTTTCATCAAATCTACTGGTTGTAATAAGATGTCGTGTGTGTGCGGTGCCAAACAATGCTACTTGTGTGATCAACCAATTCGGGATTATTCTCATTTTAATAACAATTACTCCAATGTTGATTCAAGatGTCCTTTATTCAGTAATGATGGTGAAATTAATCTGAAAAGGGTATTAAGGGGAGCGCAAGAAGCAAAAAATGAATTGGGTGATGTTGAAATTAAGTTCGATCCAACCGACAACATTCAAGcgtttttttcctaa
Protein Sequence
MEKSSNPPPYSPPQGGFQPPPQAGFHPPPQHEPQTVIVTHTVAQVPVGPSPTSTTCPSCHAQIVTSVEVETTTKTHLFALLLCLFGDMFPRTEEQVINNVIQLVEENSPFDSFEQKIENIINMLCTEGAQGPMPEISTPQNNLFTSLVSIYGHIDEDYLHTYVNDKPDNFNIEDAIEELSLCDLPKKTSHSSIDPTTIWEQLRSALPNADPSYLKKQASKFATLPTRELNIFLQNAIENNDYPSMQEYIKNKKHNDEVAMYTDNFDINKFLEIIPNAVDKFSDPNRPLVLNENSTESDQIYAMHFLYNQFRYIRCKYIDILFKRERKNLVAVCDKLEKLNNSLVKPRSIKHGEVSENIGLLQVTTYLKYRKLIKKKLKLKDEKYKSAKEEAKKYGLLETCQCCFEDELIPEECYFCMKGCVFCKGCIQKGVEVGIGKGHLKFPCMASCNSEFNLQTLQMVLPKRMFERLAQQIASEEIKKANVDGLEICPFCDFAMVLPEHEKIFKCINEECLIESCRQCRHKSHIPLKCNEIEYDEDVRRRTFIENKMTDALTRTCYQCKKSFIKSTGCNKMSCVCGAKQCYLCDQPIRDYSHFNNNYSNVDSRCPLFSNDGEINLKRVLRGAQEAKNELGDVEIKFDPTDNIQAFFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00736292;
90% Identity
iTF_00736292;
80% Identity
-