Gnym033703.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- RNF216_1
- Assembly
- GCA_963978555.1
- Location
- OZ021717.1:10538847-10546974[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.6e-11 1e-06 29.9 0.3 1 38 51 88 51 92 0.94 2 4 3 4.1e+04 -7.2 7.3 8 14 424 430 400 453 0.62 3 4 3 4.1e+04 -6.6 5.9 48 62 517 524 490 535 0.57 4 4 3 4.1e+04 -7.0 7.8 11 38 561 589 554 611 0.49
Sequence Information
- Coding Sequence
- ATGGAAAAATCATCCAACCCTCCACCTTATTCACCACCCCAAGATGGATATCAACCTCCTCCTCCAGCTGGATTTCATCCTCCTCCTCCTCAGCATACCGAACCACAAACAGtaattgtGACTCACACAGTGGCACATGTACCAGTGGGACCTTCTCCAACTTCGACAACATGCCCATCCTGCCATGCTCAGATAATTACATCCGTTGAAGTTGCAGCAACTACGAAAACACATTTGTTTGCTTTGTTGTTATTTCTTATCGGGGACATGTTTCCTAGAACAGAGGAACAAGTTATTAATAATGTTATTCAATTAGTAGAGGATAATAGTCCTCTTGATACATTTGAACAGAAAATCGAAAATATGATCAATATGTTATGCGCCGAAGGAGCTCAGGGGCCAATGCCTGAAATACCAACTccccaaaaaaattataatttgtttaCAAGTTTGGCTTCTATTTACTGTGATATAGATGAAGATTATTTGCTTACATATGTAAATAACAAACctgataattttaatattgaagatGCAATTGAAGAATTATCATTATATGATTTACCAAAAAAAACTACTAATTCATCAATTGATCCAACAATTATTTGGGAGCAGCTTAGGTCAGCTCTACCAAATGCTGATCCATCATATTTGAAAAAGCAAGCTAGTAAATTTGCCAGGCTTCCTACTAGAGAGCTGAatgtttttttacaaaatgctATTGAGAACAATGACTATCCATCAATGCAAGAATATATAAAGAACAAAAAACATGATGATGAAGTGGCAATGTACACAGACAATTTTGATATAAACAAGTTTTTAGAAATCATTCCAAATGCAGTAGATAAATTCAGTGATCCAAATAGACCTTTGGTATTAAATGAAAATTCCACtgaaaatgatgaaaattttgCCATGCACTTTTTATACAATCAATTTAGATATATAAGATGTAAATACATAGATATCATGTTTAAACGagaaaagaaaaatttagtaGCTGTATGTGATAAACTAGAAAAATTAAACAAGAGCTTAATTAAACCTAGAGGTATTAGGCAAGGAGAAGTTTCGGAAAACATAGAACTATTGCAAGTGACAACCTACTTGAAATATCgtaaattgattaaaaaagaaCTAAAGTTGAAAGATGAAAAATACAAAAGTGCTAAAGAAGAAGCAAAGAAATATGGTCTTTTAGAAACCTGTCAGTGTTGTTTCGATGACGAATTAATACCGGAAGAATGTTACTTTTGTATGAAGGGTTGCGTTTTTTGCAAAGAATGTATTCAAAAAGGTGTCGAGGTCGGTATTGGAAAAGGGCATTTTACATTTCCATGCATGGCCAGTTGCAATTCCGAATTTAATTTACAGACTTTACAAATGGTTTTGCCAAAACGAATGTTTGAACGACTTGCTCAAAAAATAGCTAgcgaagaaataaaaaaagccaACGTAGACGGCTTGGAAATCTGTCCCTTCTGTGACTTCGCCATGGTTCTaccagaaaatgaaaaaatattcaaatgcaTCAACGAAGAATGTTTAATAGAATCTTGCCGACAATGTCGTCATAAGTCACACATTCCTTTGAAATGCAACGAGATTGAATATGACGAAGACGTAAGAAGAAGAacttttatagaaaataaaatgactgAAGCACTAACTAGAACTTGCTATCAatgtaaaaagtctttcatAAAATCTACAGGTTGTAATAAGATGTCTTGTGTGTGTGGTGCCAATCAATGCTACTTGTGTGGTCAACCGGTTCTGGGTTATACCCATTTTAATACTAATTACTCCACTGTTGATCGAAGaTGTCCCTTATTCAGCAATGATGGGGAAATTGATCTGCAAAGGGTGTTAAGGGGAGCGCAAGAAGCAAAAAATGAATTGGGTGATGTTGAAATTAAATTCGATCCAACCAACAACATTCAAGCCTTTTTTTCCTAG
- Protein Sequence
- MEKSSNPPPYSPPQDGYQPPPPAGFHPPPPQHTEPQTVIVTHTVAHVPVGPSPTSTTCPSCHAQIITSVEVAATTKTHLFALLLFLIGDMFPRTEEQVINNVIQLVEDNSPLDTFEQKIENMINMLCAEGAQGPMPEIPTPQKNYNLFTSLASIYCDIDEDYLLTYVNNKPDNFNIEDAIEELSLYDLPKKTTNSSIDPTIIWEQLRSALPNADPSYLKKQASKFARLPTRELNVFLQNAIENNDYPSMQEYIKNKKHDDEVAMYTDNFDINKFLEIIPNAVDKFSDPNRPLVLNENSTENDENFAMHFLYNQFRYIRCKYIDIMFKREKKNLVAVCDKLEKLNKSLIKPRGIRQGEVSENIELLQVTTYLKYRKLIKKELKLKDEKYKSAKEEAKKYGLLETCQCCFDDELIPEECYFCMKGCVFCKECIQKGVEVGIGKGHFTFPCMASCNSEFNLQTLQMVLPKRMFERLAQKIASEEIKKANVDGLEICPFCDFAMVLPENEKIFKCINEECLIESCRQCRHKSHIPLKCNEIEYDEDVRRRTFIENKMTEALTRTCYQCKKSFIKSTGCNKMSCVCGANQCYLCGQPVLGYTHFNTNYSTVDRRCPLFSNDGEIDLQRVLRGAQEAKNELGDVEIKFDPTNNIQAFFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00911570;
- 90% Identity
- iTF_00911570;
- 80% Identity
- -