Lcap048213.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- -
- Assembly
- GCA_949126875.1
- Location
- OX421410.1:12716384-12717403[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.39 1.1e+04 -1.8 0.0 27 46 70 89 69 97 0.68 2 4 0.0021 61 5.5 0.0 23 44 94 115 83 121 0.84 3 4 0.00064 19 7.1 0.0 21 52 204 235 200 237 0.89 4 4 3.9e-06 0.11 14.2 0.1 21 48 260 287 248 291 0.87
Sequence Information
- Coding Sequence
- atgaattcagatgGAGATTTATCAGATGATGAGTTTTGGGATAAACCGAAAATTTCACGAAAGGATGAGCACGAAACATGTATGGTAAAGAAAAAAGAACATGAACGTTTTGAATGTAAACtgtgcaataaaatattttatggaaaatcATCCTTTGCTAATCATACTCGTATGCATAAATATAAACGAGAACCAAAAAAGTTCCTatgtaattattgtggtaaaaattttatgaaaagcTCTCATCTGGAAAGACATATTCGAAGTCACACTGGAGTTAAACCATTTGAATGTGAAAACTGTGGGAAAAGTTTTGTTCAAAGTAATGACCTCAAAAGACATTTATTAACACATACcagagaaaaaatatttcagTGCAAGCATTGTAATAAAGGGTTCCACCAGAAGTCATGTCTTGTTAATCACATTATGACTCatagtaatgaaaaaaaattccctTGTGACTTTTGTGATAAAAAGTTTACTATGAAAACATATCTTAACATACATAAGAGAATCCACACAGGACAGAAATTGTTCCATTGCTCTCATTGTGACAAGCAATTCCACCAAAAGAGTGGTCTTAATAACCACATCCTAACACATACTGGAGAAAAGCCATTCAAATGTACCCAGTGtgataaaacttttattcaatcAAATCATCTAAAGGAACACCTAAGGATTCATAGCGGGGAAAAACCCTATGTTTGTTCTTACTGTGGCAAAAACTTCACTTATGGCAGCACGTTAAAAGTTCATTTACGACAACATACAGGTGAAACACCACATATTTGTTCATTTTGTGGTAAAGGTTATAGAGATTCAAGTAATTTACGAAGACACACCAATAGGCATCATGTTAATGGTTCGAATAAAAATTCAACTAATCATGAAAATATAGAAGTTAAATAA
- Protein Sequence
- MNSDGDLSDDEFWDKPKISRKDEHETCMVKKKEHERFECKLCNKIFYGKSSFANHTRMHKYKREPKKFLCNYCGKNFMKSSHLERHIRSHTGVKPFECENCGKSFVQSNDLKRHLLTHTREKIFQCKHCNKGFHQKSCLVNHIMTHSNEKKFPCDFCDKKFTMKTYLNIHKRIHTGQKLFHCSHCDKQFHQKSGLNNHILTHTGEKPFKCTQCDKTFIQSNHLKEHLRIHSGEKPYVCSYCGKNFTYGSTLKVHLRQHTGETPHICSFCGKGYRDSSNLRRHTNRHHVNGSNKNSTNHENIEVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00459168;
- 90% Identity
- iTF_00911271;
- 80% Identity
- iTF_00911271;