Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.013 16 7.3 1.3 13 31 33 51 20 60 0.80

2 9 0.0011 1.4 10.7 3.6 12 41 63 89 54 90 0.81

3 9 0.065 77 5.1 0.3 18 39 97 115 94 120 0.86

4 9 0.015 18 7.1 8.9 5 40 113 144 111 148 0.85

5 9 0.11 1.3e+02 4.3 0.3 13 29 148 164 144 174 0.81

6 9 0.052 62 5.4 2.5 17 39 180 199 166 203 0.78

7 9 1.3 1.6e+03 0.9 2.1 16 40 207 228 198 230 0.81

8 9 4.7e-05 0.056 15.1 2.5 4 40 224 256 221 259 0.84

9 9 0.0019 2.2 10.0 3.7 17 43 264 287 257 288 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.013	16	7.3	1.3	13	31	33	51	20	60	0.80
2	9	0.0011	1.4	10.7	3.6	12	41	63	89	54	90	0.81
3	9	0.065	77	5.1	0.3	18	39	97	115	94	120	0.86
4	9	0.015	18	7.1	8.9	5	40	113	144	111	148	0.85
5	9	0.11	1.3e+02	4.3	0.3	13	29	148	164	144	174	0.81
6	9	0.052	62	5.4	2.5	17	39	180	199	166	203	0.78
7	9	1.3	1.6e+03	0.9	2.1	16	40	207	228	198	230	0.81
8	9	4.7e-05	0.056	15.1	2.5	4	40	224	256	221	259	0.84
9	9	0.0019	2.2	10.0	3.7	17	43	264	287	257	288	0.87

Coding Sequence: atgaattcagatgGAGATTTATCAGATGATGAGTTTTGGGATAAACCGAAAATTTCACGAAAGGATGAGCACGAAACATGTATGGTAAAGAAAAAAGAACATGAACGTTTTGAATGTAAACtgtgcaataaaatattttatggaaaatcATCCTTTGCTAATCATACTCGTATGCATAAATATAAACGAGAACCAAAAAAGTTCCTatgtaattattgtggtaaaaattttatgaaaagcTCTCATCTGGAAAGACATATTCGAAGTCACACTGGAGTTAAACCATTTGAATGTGAAAACTGTGGGAAAAGTTTTGTTCAAAGTAATGACCTCAAAAGACATTTATTAACACATACcagagaaaaaatatttcagTGCAAGCATTGTAATAAAGGGTTCCACCAGAAGTCATGTCTTGTTAATCACATTATGACTCatagtaatgaaaaaaaattccctTGTGACTTTTGTGATAAAAAGTTTACTATGAAAACATATCTTAACATACATAAGAGAATCCACACAGGACAGAAATTGTTCCATTGCTCTCATTGTGACAAGCAATTCCACCAAAAGAGTGGTCTTAATAACCACATCCTAACACATACTGGAGAAAAGCCATTCAAATGTACCCAGTGtgataaaacttttattcaatcAAATCATCTAAAGGAACACCTAAGGATTCATAGCGGGGAAAAACCCTATGTTTGTTCTTACTGTGGCAAAAACTTCACTTATGGCAGCACGTTAAAAGTTCATTTACGACAACATACAGGTGAAACACCACATATTTGTTCATTTTGTGGTAAAGGTTATAGAGATTCAAGTAATTTACGAAGACACACCAATAGGCATCATGTTAATGGTTCGAATAAAAATTCAACTAATCATGAAAATATAGAAGTTAAATAA
Protein Sequence: MNSDGDLSDDEFWDKPKISRKDEHETCMVKKKEHERFECKLCNKIFYGKSSFANHTRMHKYKREPKKFLCNYCGKNFMKSSHLERHIRSHTGVKPFECENCGKSFVQSNDLKRHLLTHTREKIFQCKHCNKGFHQKSCLVNHIMTHSNEKKFPCDFCDKKFTMKTYLNIHKRIHTGQKLFHCSHCDKQFHQKSGLNNHILTHTGEKPFKCTQCDKTFIQSNHLKEHLRIHSGEKPYVCSYCGKNFTYGSTLKVHLRQHTGETPHICSFCGKGYRDSSNLRRHTNRHHVNGSNKNSTNHENIEVK

Sequence clustering based on sequence similarity using MMseqs2