Basic Information

Insect: Lochmaea capreae
Gene Symbol: -
Assembly: GCA_949126875.1
Location: OX421406.1:4329290-4337378[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.7 3.5e+02 3.6 3.9 2 21 522 544 522 547 0.66

2 8 0.0047 0.97 11.6 1.6 1 19 925 943 925 946 0.92

3 8 0.00056 0.11 14.6 0.4 1 21 965 985 965 986 0.95

4 8 0.00011 0.022 16.8 1.8 3 23 997 1017 995 1017 0.97

5 8 2.8e-05 0.0057 18.7 5.4 1 23 1023 1045 1023 1045 0.98

6 8 2.3e-05 0.0048 18.9 0.3 1 23 1058 1080 1058 1080 0.96

7 8 0.00015 0.032 16.3 8.5 1 23 1086 1108 1086 1108 0.98

8 8 6.6e-06 0.0014 20.6 0.5 3 23 1116 1136 1114 1136 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.7	3.5e+02	3.6	3.9	2	21	522	544	522	547	0.66
2	8	0.0047	0.97	11.6	1.6	1	19	925	943	925	946	0.92
3	8	0.00056	0.11	14.6	0.4	1	21	965	985	965	986	0.95
4	8	0.00011	0.022	16.8	1.8	3	23	997	1017	995	1017	0.97
5	8	2.8e-05	0.0057	18.7	5.4	1	23	1023	1045	1023	1045	0.98
6	8	2.3e-05	0.0048	18.9	0.3	1	23	1058	1080	1058	1080	0.96
7	8	0.00015	0.032	16.3	8.5	1	23	1086	1108	1086	1108	0.98
8	8	6.6e-06	0.0014	20.6	0.5	3	23	1116	1136	1114	1136	0.97

Sequence Information

Coding Sequence: atGTCGACAATTCGACGTTCAGCAATCTGGAACGTTTTTACAGAAACCCACAAATCTGATTTTATAGCCACTTGTAATTTATGTTCTCAAGAATTCTCTTATAGATCAACAACTACCAATTTAAAGAAACATCTGCAGAAAAAGCATCCTGGTGTAGATATAAACTGTCCCATGCAACAGCAGAAAGATGAACAATTACCAAAAGAAGTTGAAATTGTAATTGGAACACAACTGGAAACTGCCTGTGAAGTAAAGTCATTTAAAGTAGAGGTGCAACCTGTTCCTGAAGATTGCAATTATATAGTATTGAATACAGCTAAACCGATACCACGACTATGGGATTATTTTACGAAACTTCCATCTTCAGATTGTGTAGCTTCTTGTATTGTTTGCCATAAGGAGTTTTCTTATAAGACAACTACCTGGAATCTTAAGAAGCATCTAGATAGGAATCATCCAGAATTACAAGCAGTAAGTGATGAAACTAATCCTACTTTTATAGCGTATAATTCTGATGAAGATACATCTAGTGGCGATGAAAGTAATAGTAATGATTTAGTAACAAATTCTCGTAAAAATTCGTCTcctatttggaaattttttactAAAGTATCTGATTCTGACTCCATAGCAATGTGTAACTTTTGCAGAAAGAGTATTTCATATAAATCGACTATTAATAATCTCAAAAAGCACGTAAATAGAAAACATTCTGAACATTGTATACAAAATGATACCTCTGAGAATTTACATTCTGAAGAATATATTCTAGAATCTTCTAGTCCTGACAAAACATTTCCTatgtggaaatatttcacgaaaaTACCATTATCCGATTGTATTGCGTCTTGTAATTtgtgtcaaaaggaaatttcttATAAATCTACTGTAGGAAAtcttcaaaaacattttaatagaaaGCATTTTCAAGAATTATCAGATAGCTATGATACAAGTAGTGATTCAGATGAGGATAAAGTAGATTCTCATAATGAAGAGCCTTTAGGGAAGAGAGAATCGCGAATGTgggaattttttacaaaaattgaagattctaATACCAAGGCTTCttgtaatttttgcaaaaagaTCATTTCTTACAGAAGTAGTACAGGAAATCTTCAGAAACACTTGAATCGAAAGCATTCGAAAAAATCGGATGTTAGTGATGATGAAAATAAAAGTGAATGGGAGGAAAATAGTgaagtttttaatgaaaaacagGACTGTGATGTAGATGCCACTTGTACAAAAAGGAGGTCTAGAATGTGGCAATTTTTTACTAAAGTTGCAGATTCAGAAACCAAAGCTACatgtaaattttgtaaaaaagatATTTCTTACAAATCAACCactaacaatcttcaaaaacatATAATAAGAAAGCACCCTAAAAAACATTTGGTACATtgtgaaagaaataaaaattttgtttataatcaAAGTAAAGAATTGTCTCACAATAATGAAATACATAACTCTAAtatagttttaaattttgagaaaAGTGAGTATAAAGTTTGGGAACTTTTTACTAAAATTCCTGCTTCTGATTCTATAGCCTCttgtaatatttgtaaaaaGGAGTTTTCTTATAAGACAACTACTGGTAATCTTAAGAAGCATGTTTATAGGAAACATAAACAACTAGTGgaTGTAACCGACGAACAAGAACAAGTATACCAGGAATCAAACGAAGAATTCGATCAAAACAAAAGTGAAGAGCTACAAGAAAAGGAAATCGAAGGACAGTATCAACATCAACCCGAACAAATATTATTAGATAACACTAAAGTATTtccaaatattgataataacacAAATGATCCGAATCAACAAATAGACAGTAACACCGATGAACTCGAAAATGATTTTTGGAATTTAGATCAATCTGACGATGACGATCCCGATTTCAGACCTTCACCCACTTTCGATGAGGTAGCCGATACGAAAATTACATCTACTATCAAAAAACGATCACAGATTTGGAATGTTTTTACCGAAAAACCAAATTCTGATTGTGTAGCCATCTGCAATGTTTGTAATCAAGAATTCTGTTACAGAAGTACAACTAATAAtcttaaaaaacattttcaaaggaAGCATCCCGATGTTActtttgatattaaaattgaatgTGTCAAAGAGGAAAATACCGCCATGGGTCAAGTTGAGTCGACTTCACGTATCCACAAAACCGAAGGAGAGGAGGACGATAGAGATTCTTCGGATGGTAATACAAAGAGAAAACGTTCTCAAATTTGGAAATACTTTACGAGAAAAAAACCAGGGGAGTACGTCGCCAGCTGTAATATATGCAAAAAAGAACTGGGTTTTAGGTCGACAACATCgaatttgaaaaaacatttagaTAGAAAACATCCTAATGTTAAAATGAAAAGTGAAGATGACGAAAAAAATACACCGGAAGTTCGTGTGAAAACATGTTTAATTTGTTTGCAAAGCGATCAAACGGAACCTAGGGAATTCATACAGATCAATAACACAAATACTGAACAAGAAAAAAGTTACATTACGAAAATACAAGAAGTTATGAATCAGTCTGTGGTCATAGACGAATCGCATGTAATTTGTCTGCCGTGCGTCGAcgatttggaaaaagttattcaatTTAGAGAAAGAGTATCGAAAGCCTTTGAATTTTGGAGTAAAGCTGAACCAGAACCCGAACTTGACACATACGATAATGATGGAGACGACATAAACCATTCAGACCTCAGTGATTTAGAAGATGGCGAAAGCTTGGCGAAATTCACTTGTAGCAAGTGTAATAAAGTGTTTCCTTCTCCGTCTGTAATGCTTAAACACAACTGCCGGCAACAATCTAGGAAAGACAAACCATCTCTGAAGAAGGATACTTCTCAAGAAACGTTTTACTGTGAATTCTGCGGAAAGGCTTTTAATATCAGATGgaaattgaataaacatttaaaaatATGCCAATCGAACTCTAGCAAACAATTTGGTTGTAACTTGTGTAATAGGATATTCAAAAAGGCCTACCATCTTCGAGAACATATGGCGTCGCATACGGGAGAACGAAATTACAGTTGTAATTTGTGCGGAAAAACTTTTCAGAGATCGTCATCGAAACACAAACATATGCGTAGCCATAACGCGAAACCGggagaaaaatctaaaaaaacgCCATTTTTGTGTACGATATGTGGCAAAAGTTTCCCTTACAGCAACGGAGCGTCGAGACATATGAGGGTTCATCTCGGCGAGAGAAGACATCAGTGccatatttgtttgaaaaaattcagCCAAACGACGCATCTGAAGgTCCATCTTCGCACTCACTCGGGTGAACGACCGTACGGTTGTATGATCTGCGGGAGAACGTTTTCCTTGAACGCTAGTCTTCGCAAACATATGAGACTTCACGTTGGTTCTGGAGATTTTGTGAAATTAGTGAAAAATCTTGAAACCAGTTTTCCTCATACAGATATGGTAACCGAAGATGGGTtacaaattttgacagctgtcgcGCACGCGCCGCAAGAAATCGACATGGATGGTAACCAGTGTATCGtttaa
Protein Sequence: MSTIRRSAIWNVFTETHKSDFIATCNLCSQEFSYRSTTTNLKKHLQKKHPGVDINCPMQQQKDEQLPKEVEIVIGTQLETACEVKSFKVEVQPVPEDCNYIVLNTAKPIPRLWDYFTKLPSSDCVASCIVCHKEFSYKTTTWNLKKHLDRNHPELQAVSDETNPTFIAYNSDEDTSSGDESNSNDLVTNSRKNSSPIWKFFTKVSDSDSIAMCNFCRKSISYKSTINNLKKHVNRKHSEHCIQNDTSENLHSEEYILESSSPDKTFPMWKYFTKIPLSDCIASCNLCQKEISYKSTVGNLQKHFNRKHFQELSDSYDTSSDSDEDKVDSHNEEPLGKRESRMWEFFTKIEDSNTKASCNFCKKIISYRSSTGNLQKHLNRKHSKKSDVSDDENKSEWEENSEVFNEKQDCDVDATCTKRRSRMWQFFTKVADSETKATCKFCKKDISYKSTTNNLQKHIIRKHPKKHLVHCERNKNFVYNQSKELSHNNEIHNSNIVLNFEKSEYKVWELFTKIPASDSIASCNICKKEFSYKTTTGNLKKHVYRKHKQLVDVTDEQEQVYQESNEEFDQNKSEELQEKEIEGQYQHQPEQILLDNTKVFPNIDNNTNDPNQQIDSNTDELENDFWNLDQSDDDDPDFRPSPTFDEVADTKITSTIKKRSQIWNVFTEKPNSDCVAICNVCNQEFCYRSTTNNLKKHFQRKHPDVTFDIKIECVKEENTAMGQVESTSRIHKTEGEEDDRDSSDGNTKRKRSQIWKYFTRKKPGEYVASCNICKKELGFRSTTSNLKKHLDRKHPNVKMKSEDDEKNTPEVRVKTCLICLQSDQTEPREFIQINNTNTEQEKSYITKIQEVMNQSVVIDESHVICLPCVDDLEKVIQFRERVSKAFEFWSKAEPEPELDTYDNDGDDINHSDLSDLEDGESLAKFTCSKCNKVFPSPSVMLKHNCRQQSRKDKPSLKKDTSQETFYCEFCGKAFNIRWKLNKHLKICQSNSSKQFGCNLCNRIFKKAYHLREHMASHTGERNYSCNLCGKTFQRSSSKHKHMRSHNAKPGEKSKKTPFLCTICGKSFPYSNGASRHMRVHLGERRHQCHICLKKFSQTTHLKVHLRTHSGERPYGCMICGRTFSLNASLRKHMRLHVGSGDFVKLVKNLETSFPHTDMVTEDGLQILTAVAHAPQEIDMDGNQCIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00735975;
90% Identity: iTF_00911238;
80% Identity: iTF_00911238;