Basic Information

Insect: Galerucella nymphaeae
Gene Symbol: -
Assembly: GCA_963978555.1
Location: OZ021706.1:21959781-21965077[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 5.2e-13 4.9e-10 40.4 1.7 1 44 7 50 7 50 0.97

2 14 6.1e-14 5.7e-11 43.4 1.4 3 44 113 154 112 154 0.98

3 14 1.1e-13 1e-10 42.6 1.5 1 44 193 236 193 236 0.97

4 14 6.2e-14 5.8e-11 43.4 2.5 1 43 285 327 285 328 0.97

5 14 3.5e-11 3.3e-08 34.6 2.0 1 44 367 412 367 412 0.93

6 14 4.9e-10 4.6e-07 30.9 2.6 1 44 523 566 523 566 0.97

7 14 4e-14 3.8e-11 44.0 0.5 1 44 615 658 615 658 0.98

8 14 1.3 1.2e+03 0.8 0.0 16 26 787 797 779 806 0.84

9 14 0.37 3.4e+02 2.5 0.6 17 29 828 840 820 855 0.79

10 14 1.6 1.5e+03 0.4 2.6 13 28 854 869 841 880 0.71

11 14 0.076 71 4.7 5.3 15 38 884 908 871 909 0.77

12 14 0.0022 2.1 9.6 0.2 18 44 922 950 914 950 0.72

13 14 0.22 2.1e+02 3.2 4.7 18 41 950 970 945 971 0.90

14 14 0.28 2.6e+02 2.9 1.0 19 40 979 997 977 999 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	5.2e-13	4.9e-10	40.4	1.7	1	44	7	50	7	50	0.97
2	14	6.1e-14	5.7e-11	43.4	1.4	3	44	113	154	112	154	0.98
3	14	1.1e-13	1e-10	42.6	1.5	1	44	193	236	193	236	0.97
4	14	6.2e-14	5.8e-11	43.4	2.5	1	43	285	327	285	328	0.97
5	14	3.5e-11	3.3e-08	34.6	2.0	1	44	367	412	367	412	0.93
6	14	4.9e-10	4.6e-07	30.9	2.6	1	44	523	566	523	566	0.97
7	14	4e-14	3.8e-11	44.0	0.5	1	44	615	658	615	658	0.98
8	14	1.3	1.2e+03	0.8	0.0	16	26	787	797	779	806	0.84
9	14	0.37	3.4e+02	2.5	0.6	17	29	828	840	820	855	0.79
10	14	1.6	1.5e+03	0.4	2.6	13	28	854	869	841	880	0.71
11	14	0.076	71	4.7	5.3	15	38	884	908	871	909	0.77
12	14	0.0022	2.1	9.6	0.2	18	44	922	950	914	950	0.72
13	14	0.22	2.1e+02	3.2	4.7	18	41	950	970	945	971	0.90
14	14	0.28	2.6e+02	2.9	1.0	19	40	979	997	977	999	0.79

Sequence Information

Coding Sequence: atgtCGACAATTCGACGTTCGGCGATCTGGAACGTTTTCACAGAAACCCACAAATCTGATTTTATAGCCACTTGTAATTTATGTTCTCAAGAATTCTCTTACAGATCAACAACTACTAATTTAAAGAAACATCTGCAGAAAAAACATCCTGGTGTTGATATAAACTGTCCCATGCAACAGCAGAAAGAAGATGAATCATTACCAAAAGAAGTTGAGATTGTAATTGGAACACAACTGGAAACTGCTTGTGAAGTAAAGTCATTTAAAGTAGAAGTGCAACCTGTTCCTGAAAATTGCAATTACATAGTATTGAATACAGCTAAACCGATACCACAACTTTGGGATTATTTTACAAAACTTCCATCTGCAGACTGTGTAGCTTCTTGTATTGTTTGCCATAAGGAGTTTTCTTATAAGACAACTACCTGGAATCTTAAGAAGCATCTTGATAGGAATCATCCAGAATTACAAGCAGTAAGTGATGAAACTTTTATAGCATATAATTCTGATGAAGATACATCTAGTAGCGATGAAAGTAATAGTAATGATTTAATAACAAATTCTCGTAAAAATGTGTCTCCTATTTGGAAgttttttactaaaatattagATTCTGACTCCATAGCAATGTGTAATTTTTGTCAAAGGAGTATTTCATATAAGTCAACTACTAATAATCTCAAAAAACACATAAATAGAAAACATTCTGAACATGGTACCTCTGAGAATTTGAATTCTGGAGAATATATTCTAGAAACTCTCAGTTCTGACAAAACACTGTTATCTGATTGTGATTCCAATGAGTCAAATAATGAAGATATAATTATACAACTGCCTTTGGGTAAGAGAGAATCACGAATGTGggatttttttacaaaaattgaagATTCTAATACCAAGGCTTCTTGTAATTCTTGCAAAAAGATAATTTCTTACAAAAGCAGCACAGGTAATCTTCAGAAACACTTGAATAGAAAGCATACGAAAAAATCGGAAGTAAGTGATGATGAAAATAAAAGTGAATTAGAGGAAAATAGTGaagaattatttaatgaaaaacagGACTGTGATGTAGAGGCTACTTCTGCAAAACGGAGGTCTAGAATGTGGCAATTTTTTACTAAAGTTGCAGATTCAGAAACCAAAGCTAcatCCTCTTGTAATATTTGTAAACAGGAGTTTTCTTATAAGTCAACTACTGGTAATCTTAAGAAGCATGTTTATAGGAAGCATAAACAACTAGTGgaTGTATCAGATGAACAAGAACAAGTCTATCAGGAATCAAACGAAGAATTTGATCAAAACAAAAGTGAAGAGCTGCAAGATAGGGAAATCGAACAGTATCAACATCAACCCGAACAAATATTGTTGGATAACACtaaagtattttcaaatattgataGTAACCCAATTGATCCAAATCAACAAATAGACAGCAACACTGATGAACTCGAAAACGATTTCTGGAATTTAGACCAATCTGACGACGACGATCCCGATTTCAGACCGTCACCCACTTTTGACGAAGTAGCCGATACCAAAATTACATCTACTGCAAAAAAAAGATCGCAGATCTGGAACGTTTTCACCGAAAAACCGAATTCTGATTGTGTAGCCATCTGCAATGTTTGTAATCAAGAATTCTGTTACAGAAGTACCACTAACAATctcaaaaaacattttcaaaggAAGCATCCCGATGTTACTTTCGACATTAAAATCGAATGTGTCAAAGAGGAAAATACCACCATGGGACAAATTGAATCGACTTCACGTATGCATAAAAACGAAGGGGAGGAAGACGATAGGGATTCTTCGGATGGTAATACAAAGAGAAAACGTTCGcaaatatggaaatattttacgagaaaaaaacCGGGGGAGTACGTGGCCAGCTGTAATATTTGCAAAAAGGAACTGGGTTTTAGGTCGACAAcgtcaaatttgaaaaaacatttagACAGAAAACATCCTAATGTTAAGATGAAAAGCGAAGAAGACGAAAAAAGTACTCCGGAAGTTCGTGTGAAAACATGTTTAATTTGTTTGCAAAGCGATCAAACGGAACCTAGGGAATTCATACAAATCAACAACACGAATTCCGAAGAAGAAAAAAGTTACATCACGAAAATTCAAGAAGTTATGAACCAGTCTGTGgtcATAGACGAATCGCATGTAATTTGTCTCCCGTGTGTCGACGATTTGGAAAAAGTTATTCAATTTAGAGAAAGGGTATCGAAAGCGTTTGAATTTTGGAGTAAAGCCGAACCAGAACCCGAAATTGACACATACGATAACGACGGAGATGATGTGAACCATTCAGACCTCAGTGATTTAGAGGATGGCGAAAGCTTGGCGAAGTTCACTTGTAGCAAGTGTAACAAAGTGTTTCCTTCGCCATCTGTAATGCTTAGACACAACTGCCGGCAACAGTCTAGAAAAGACAGACCCTCTCTGAAGAAGGATACTTCTCAAGAAACGTTTTACTGCGAATTTTGCGGCAAAGCTTTCAATATCAGGTGGAAAttgaataaacatttaaaaatATGCCAATCGAACTCTAGCAAACAATTCGGTTGTAACTTGTGTAATAGGATATTCAAAAAGGCCTACCATCTTCGAGAACACATGGCGTCGCATACGGGAGAAAGGAACTACAGTTGCAATTTGTGCGGTAAAACTTTTCAGAGATCGTCGTCCAAGCACAAACATATGCGTAGTCACAACGCTAAACCGGGAGAAAAATCTAAAAAGACGCCGTTTTTGTGTACCATATGCGGCAAAAGCTTTCCTTACAGCAACGGCGCGTCGAGGCATATGAGGGTGCATCTCGGCGAGAGAAGGCACCAGTGccatatttgtttgaaaaaattcagtCAAACGACGCATCTGAAGgTACATCTTCGCACTCACTCGGGAGAACGACCGTACGGTTGTATGATCTGCGGTAGGACTTTCTCCTTGAACGCTAGTCTTCGCAAACATATGAGACTTCACGTTGGTTCCGGAGATTTTGTAAAGTTAGTGAAAAATCTCGAAACCACTTTCCCCCACACAGATATGGTCACCGAAGACGGTTTACAAATTTTGACAGCTGTCGCTCACGCGCCTCAAGAAATCGACTTGGATGGAAACCAGTGTATCGGTTAA
Protein Sequence: MSTIRRSAIWNVFTETHKSDFIATCNLCSQEFSYRSTTTNLKKHLQKKHPGVDINCPMQQQKEDESLPKEVEIVIGTQLETACEVKSFKVEVQPVPENCNYIVLNTAKPIPQLWDYFTKLPSADCVASCIVCHKEFSYKTTTWNLKKHLDRNHPELQAVSDETFIAYNSDEDTSSSDESNSNDLITNSRKNVSPIWKFFTKILDSDSIAMCNFCQRSISYKSTTNNLKKHINRKHSEHGTSENLNSGEYILETLSSDKTLLSDCDSNESNNEDIIIQLPLGKRESRMWDFFTKIEDSNTKASCNSCKKIISYKSSTGNLQKHLNRKHTKKSEVSDDENKSELEENSEELFNEKQDCDVEATSAKRRSRMWQFFTKVADSETKATSSCNICKQEFSYKSTTGNLKKHVYRKHKQLVDVSDEQEQVYQESNEEFDQNKSEELQDREIEQYQHQPEQILLDNTKVFSNIDSNPIDPNQQIDSNTDELENDFWNLDQSDDDDPDFRPSPTFDEVADTKITSTAKKRSQIWNVFTEKPNSDCVAICNVCNQEFCYRSTTNNLKKHFQRKHPDVTFDIKIECVKEENTTMGQIESTSRMHKNEGEEDDRDSSDGNTKRKRSQIWKYFTRKKPGEYVASCNICKKELGFRSTTSNLKKHLDRKHPNVKMKSEEDEKSTPEVRVKTCLICLQSDQTEPREFIQINNTNSEEEKSYITKIQEVMNQSVVIDESHVICLPCVDDLEKVIQFRERVSKAFEFWSKAEPEPEIDTYDNDGDDVNHSDLSDLEDGESLAKFTCSKCNKVFPSPSVMLRHNCRQQSRKDRPSLKKDTSQETFYCEFCGKAFNIRWKLNKHLKICQSNSSKQFGCNLCNRIFKKAYHLREHMASHTGERNYSCNLCGKTFQRSSSKHKHMRSHNAKPGEKSKKTPFLCTICGKSFPYSNGASRHMRVHLGERRHQCHICLKKFSQTTHLKVHLRTHSGERPYGCMICGRTFSLNASLRKHMRLHVGSGDFVKLVKNLETTFPHTDMVTEDGLQILTAVAHAPQEIDLDGNQCIG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00736193; iTF_00911509; iTF_00911238;
90% Identity: iTF_00736193;
80% Identity: iTF_00736193;