Basic Information

Insect: Lochmaea capreae
Gene Symbol: -
Assembly: GCA_949126875.1
Location: OX421406.1:4329290-4337378[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 6.7e-13 8e-10 40.2 1.7 1 44 7 50 7 50 0.97

2 16 9.7e-14 1.2e-10 42.9 2.1 3 44 112 153 111 153 0.98

3 16 3e-14 3.5e-11 44.6 1.7 1 44 195 238 195 238 0.98

4 16 1.1e-12 1.3e-09 39.5 0.8 2 43 267 308 266 309 0.97

5 16 2e-14 2.3e-11 45.1 2.3 1 44 340 383 340 383 0.97

6 16 2e-15 2.3e-12 48.3 1.4 1 44 421 464 421 464 0.98

7 16 3.9e-14 4.7e-11 44.2 1.2 2 44 506 548 505 548 0.98

8 16 6.3e-10 7.5e-07 30.7 2.6 1 44 660 703 660 703 0.97

9 16 5.2e-14 6.1e-11 43.8 0.5 1 44 752 795 752 795 0.98

10 16 2 2.3e+03 0.3 0.0 16 26 924 934 917 939 0.87

11 16 0.47 5.6e+02 2.3 0.6 17 29 965 977 957 992 0.79

12 16 2.4 2.8e+03 0.0 2.9 13 28 991 1006 978 1018 0.71

13 16 0.055 65 5.3 4.3 16 38 1022 1045 1013 1046 0.77

14 16 0.0028 3.4 9.4 0.2 18 44 1059 1087 1051 1087 0.72

15 16 0.29 3.4e+02 3.0 4.7 18 41 1087 1107 1082 1108 0.90

16 16 0.36 4.2e+02 2.7 1.0 19 40 1116 1134 1114 1136 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	6.7e-13	8e-10	40.2	1.7	1	44	7	50	7	50	0.97
2	16	9.7e-14	1.2e-10	42.9	2.1	3	44	112	153	111	153	0.98
3	16	3e-14	3.5e-11	44.6	1.7	1	44	195	238	195	238	0.98
4	16	1.1e-12	1.3e-09	39.5	0.8	2	43	267	308	266	309	0.97
5	16	2e-14	2.3e-11	45.1	2.3	1	44	340	383	340	383	0.97
6	16	2e-15	2.3e-12	48.3	1.4	1	44	421	464	421	464	0.98
7	16	3.9e-14	4.7e-11	44.2	1.2	2	44	506	548	505	548	0.98
8	16	6.3e-10	7.5e-07	30.7	2.6	1	44	660	703	660	703	0.97
9	16	5.2e-14	6.1e-11	43.8	0.5	1	44	752	795	752	795	0.98
10	16	2	2.3e+03	0.3	0.0	16	26	924	934	917	939	0.87
11	16	0.47	5.6e+02	2.3	0.6	17	29	965	977	957	992	0.79
12	16	2.4	2.8e+03	0.0	2.9	13	28	991	1006	978	1018	0.71
13	16	0.055	65	5.3	4.3	16	38	1022	1045	1013	1046	0.77
14	16	0.0028	3.4	9.4	0.2	18	44	1059	1087	1051	1087	0.72
15	16	0.29	3.4e+02	3.0	4.7	18	41	1087	1107	1082	1108	0.90
16	16	0.36	4.2e+02	2.7	1.0	19	40	1116	1134	1114	1136	0.79

Sequence Information

Coding Sequence: atGTCGACAATTCGACGTTCAGCAATCTGGAACGTTTTTACAGAAACCCACAAATCTGATTTTATAGCCACTTGTAATTTATGTTCTCAAGAATTCTCTTATAGATCAACAACTACCAATTTAAAGAAACATCTGCAGAAAAAGCATCCTGGTGTAGATATAAACTGTCCCATGCAACAGCAGAAAGATGAACAATTACCAAAAGAAGTTGAAATTGTAATTGGAACACAACTGGAAACTGCCTGTGAAGTAAAGTCATTTAAAGTAGAGGTGCAACCTGTTCCTGAAGATTGCAATTATATAGTATTGAATACAGCTAAACCGATACCACGACTATGGGATTATTTTACGAAACTTCCATCTTCAGATTGTGTAGCTTCTTGTATTGTTTGCCATAAGGAGTTTTCTTATAAGACAACTACCTGGAATCTTAAGAAGCATCTAGATAGGAATCATCCAGAATTACAAGCAGTAAGTGATGAAACTAATCCTACTTTTATAGCGTATAATTCTGATGAAGATACATCTAGTGGCGATGAAAGTAATAGTAATGATTTAGTAACAAATTCTCGTAAAAATTCGTCTcctatttggaaattttttactAAAGTATCTGATTCTGACTCCATAGCAATGTGTAACTTTTGCAGAAAGAGTATTTCATATAAATCGACTATTAATAATCTCAAAAAGCACGTAAATAGAAAACATTCTGAACATTGTATACAAAATGATACCTCTGAGAATTTACATTCTGAAGAATATATTCTAGAATCTTCTAGTCCTGACAAAACATTTCCTatgtggaaatatttcacgaaaaTACCATTATCCGATTGTATTGCGTCTTGTAATTtgtgtcaaaaggaaatttcttATAAATCTACTGTAGGAAAtcttcaaaaacattttaatagaaaGCATTTTCAAGAATTATCAGATAGCTATGATACAAGTAGTGATTCAGATGAGGATAAAGTAGATTCTCATAATGAAGAGCCTTTAGGGAAGAGAGAATCGCGAATGTgggaattttttacaaaaattgaagattctaATACCAAGGCTTCttgtaatttttgcaaaaagaTCATTTCTTACAGAAGTAGTACAGGAAATCTTCAGAAACACTTGAATCGAAAGCATTCGAAAAAATCGGATGTTAGTGATGATGAAAATAAAAGTGAATGGGAGGAAAATAGTgaagtttttaatgaaaaacagGACTGTGATGTAGATGCCACTTGTACAAAAAGGAGGTCTAGAATGTGGCAATTTTTTACTAAAGTTGCAGATTCAGAAACCAAAGCTACatgtaaattttgtaaaaaagatATTTCTTACAAATCAACCactaacaatcttcaaaaacatATAATAAGAAAGCACCCTAAAAAACATTTGGTACATtgtgaaagaaataaaaattttgtttataatcaAAGTAAAGAATTGTCTCACAATAATGAAATACATAACTCTAAtatagttttaaattttgagaaaAGTGAGTATAAAGTTTGGGAACTTTTTACTAAAATTCCTGCTTCTGATTCTATAGCCTCttgtaatatttgtaaaaaGGAGTTTTCTTATAAGACAACTACTGGTAATCTTAAGAAGCATGTTTATAGGAAACATAAACAACTAGTGgaTGTAACCGACGAACAAGAACAAGTATACCAGGAATCAAACGAAGAATTCGATCAAAACAAAAGTGAAGAGCTACAAGAAAAGGAAATCGAAGGACAGTATCAACATCAACCCGAACAAATATTATTAGATAACACTAAAGTATTtccaaatattgataataacacAAATGATCCGAATCAACAAATAGACAGTAACACCGATGAACTCGAAAATGATTTTTGGAATTTAGATCAATCTGACGATGACGATCCCGATTTCAGACCTTCACCCACTTTCGATGAGGTAGCCGATACGAAAATTACATCTACTATCAAAAAACGATCACAGATTTGGAATGTTTTTACCGAAAAACCAAATTCTGATTGTGTAGCCATCTGCAATGTTTGTAATCAAGAATTCTGTTACAGAAGTACAACTAATAAtcttaaaaaacattttcaaaggaAGCATCCCGATGTTActtttgatattaaaattgaatgTGTCAAAGAGGAAAATACCGCCATGGGTCAAGTTGAGTCGACTTCACGTATCCACAAAACCGAAGGAGAGGAGGACGATAGAGATTCTTCGGATGGTAATACAAAGAGAAAACGTTCTCAAATTTGGAAATACTTTACGAGAAAAAAACCAGGGGAGTACGTCGCCAGCTGTAATATATGCAAAAAAGAACTGGGTTTTAGGTCGACAACATCgaatttgaaaaaacatttagaTAGAAAACATCCTAATGTTAAAATGAAAAGTGAAGATGACGAAAAAAATACACCGGAAGTTCGTGTGAAAACATGTTTAATTTGTTTGCAAAGCGATCAAACGGAACCTAGGGAATTCATACAGATCAATAACACAAATACTGAACAAGAAAAAAGTTACATTACGAAAATACAAGAAGTTATGAATCAGTCTGTGGTCATAGACGAATCGCATGTAATTTGTCTGCCGTGCGTCGAcgatttggaaaaagttattcaatTTAGAGAAAGAGTATCGAAAGCCTTTGAATTTTGGAGTAAAGCTGAACCAGAACCCGAACTTGACACATACGATAATGATGGAGACGACATAAACCATTCAGACCTCAGTGATTTAGAAGATGGCGAAAGCTTGGCGAAATTCACTTGTAGCAAGTGTAATAAAGTGTTTCCTTCTCCGTCTGTAATGCTTAAACACAACTGCCGGCAACAATCTAGGAAAGACAAACCATCTCTGAAGAAGGATACTTCTCAAGAAACGTTTTACTGTGAATTCTGCGGAAAGGCTTTTAATATCAGATGgaaattgaataaacatttaaaaatATGCCAATCGAACTCTAGCAAACAATTTGGTTGTAACTTGTGTAATAGGATATTCAAAAAGGCCTACCATCTTCGAGAACATATGGCGTCGCATACGGGAGAACGAAATTACAGTTGTAATTTGTGCGGAAAAACTTTTCAGAGATCGTCATCGAAACACAAACATATGCGTAGCCATAACGCGAAACCGggagaaaaatctaaaaaaacgCCATTTTTGTGTACGATATGTGGCAAAAGTTTCCCTTACAGCAACGGAGCGTCGAGACATATGAGGGTTCATCTCGGCGAGAGAAGACATCAGTGccatatttgtttgaaaaaattcagCCAAACGACGCATCTGAAGgTCCATCTTCGCACTCACTCGGGTGAACGACCGTACGGTTGTATGATCTGCGGGAGAACGTTTTCCTTGAACGCTAGTCTTCGCAAACATATGAGACTTCACGTTGGTTCTGGAGATTTTGTGAAATTAGTGAAAAATCTTGAAACCAGTTTTCCTCATACAGATATGGTAACCGAAGATGGGTtacaaattttgacagctgtcgcGCACGCGCCGCAAGAAATCGACATGGATGGTAACCAGTGTATCGtttaa
Protein Sequence: MSTIRRSAIWNVFTETHKSDFIATCNLCSQEFSYRSTTTNLKKHLQKKHPGVDINCPMQQQKDEQLPKEVEIVIGTQLETACEVKSFKVEVQPVPEDCNYIVLNTAKPIPRLWDYFTKLPSSDCVASCIVCHKEFSYKTTTWNLKKHLDRNHPELQAVSDETNPTFIAYNSDEDTSSGDESNSNDLVTNSRKNSSPIWKFFTKVSDSDSIAMCNFCRKSISYKSTINNLKKHVNRKHSEHCIQNDTSENLHSEEYILESSSPDKTFPMWKYFTKIPLSDCIASCNLCQKEISYKSTVGNLQKHFNRKHFQELSDSYDTSSDSDEDKVDSHNEEPLGKRESRMWEFFTKIEDSNTKASCNFCKKIISYRSSTGNLQKHLNRKHSKKSDVSDDENKSEWEENSEVFNEKQDCDVDATCTKRRSRMWQFFTKVADSETKATCKFCKKDISYKSTTNNLQKHIIRKHPKKHLVHCERNKNFVYNQSKELSHNNEIHNSNIVLNFEKSEYKVWELFTKIPASDSIASCNICKKEFSYKTTTGNLKKHVYRKHKQLVDVTDEQEQVYQESNEEFDQNKSEELQEKEIEGQYQHQPEQILLDNTKVFPNIDNNTNDPNQQIDSNTDELENDFWNLDQSDDDDPDFRPSPTFDEVADTKITSTIKKRSQIWNVFTEKPNSDCVAICNVCNQEFCYRSTTNNLKKHFQRKHPDVTFDIKIECVKEENTAMGQVESTSRIHKTEGEEDDRDSSDGNTKRKRSQIWKYFTRKKPGEYVASCNICKKELGFRSTTSNLKKHLDRKHPNVKMKSEDDEKNTPEVRVKTCLICLQSDQTEPREFIQINNTNTEQEKSYITKIQEVMNQSVVIDESHVICLPCVDDLEKVIQFRERVSKAFEFWSKAEPEPELDTYDNDGDDINHSDLSDLEDGESLAKFTCSKCNKVFPSPSVMLKHNCRQQSRKDKPSLKKDTSQETFYCEFCGKAFNIRWKLNKHLKICQSNSSKQFGCNLCNRIFKKAYHLREHMASHTGERNYSCNLCGKTFQRSSSKHKHMRSHNAKPGEKSKKTPFLCTICGKSFPYSNGASRHMRVHLGERRHQCHICLKKFSQTTHLKVHLRTHSGERPYGCMICGRTFSLNASLRKHMRLHVGSGDFVKLVKNLETSFPHTDMVTEDGLQILTAVAHAPQEIDMDGNQCIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00735975;
90% Identity: iTF_00911509;
80% Identity: iTF_00911509;