Basic Information

Insect: Lochmaea capreae
Gene Symbol: Zfpm1
Assembly: GCA_949126875.1
Location: OX421395.1:4053082-4056708[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.5 9.1e+02 2.3 0.1 2 23 7 28 6 28 0.91

2 15 0.018 3.7 9.8 2.7 1 23 545 568 545 568 0.91

3 15 0.29 60 6.0 0.7 2 23 646 668 645 668 0.93

4 15 0.0018 0.37 13.0 1.8 1 23 676 698 676 698 0.98

5 15 0.00043 0.088 14.9 4.0 2 23 701 722 700 722 0.97

6 15 0.026 5.3 9.3 2.4 1 23 728 750 728 750 0.81

7 15 7e-05 0.014 17.4 5.5 2 23 757 778 756 779 0.95

8 15 0.55 1.1e+02 5.1 2.8 5 23 792 810 791 810 0.96

9 15 0.0057 1.2 11.4 2.5 3 23 817 838 816 838 0.97

10 15 0.29 59 6.0 0.1 2 23 854 874 853 874 0.96

11 15 0.00026 0.054 15.6 1.6 1 20 880 899 880 902 0.92

12 15 8.1e-05 0.017 17.2 0.2 1 23 910 932 910 932 0.99

13 15 0.0021 0.43 12.8 3.2 1 23 938 960 938 960 0.97

14 15 7e-07 0.00014 23.7 3.6 1 23 966 988 966 988 0.98

15 15 0.00096 0.2 13.8 7.2 1 23 994 1016 994 1017 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.5	9.1e+02	2.3	0.1	2	23	7	28	6	28	0.91
2	15	0.018	3.7	9.8	2.7	1	23	545	568	545	568	0.91
3	15	0.29	60	6.0	0.7	2	23	646	668	645	668	0.93
4	15	0.0018	0.37	13.0	1.8	1	23	676	698	676	698	0.98
5	15	0.00043	0.088	14.9	4.0	2	23	701	722	700	722	0.97
6	15	0.026	5.3	9.3	2.4	1	23	728	750	728	750	0.81
7	15	7e-05	0.014	17.4	5.5	2	23	757	778	756	779	0.95
8	15	0.55	1.1e+02	5.1	2.8	5	23	792	810	791	810	0.96
9	15	0.0057	1.2	11.4	2.5	3	23	817	838	816	838	0.97
10	15	0.29	59	6.0	0.1	2	23	854	874	853	874	0.96
11	15	0.00026	0.054	15.6	1.6	1	20	880	899	880	902	0.92
12	15	8.1e-05	0.017	17.2	0.2	1	23	910	932	910	932	0.99
13	15	0.0021	0.43	12.8	3.2	1	23	938	960	938	960	0.97
14	15	7e-07	0.00014	23.7	3.6	1	23	966	988	966	988	0.98
15	15	0.00096	0.2	13.8	7.2	1	23	994	1016	994	1017	0.96

Sequence Information

Coding Sequence: ATGGATTCAATTAATATAGTTTGTCCAGTGTGTACCTTATATTTAAGGCCAGGCATAACTTTGAAACAGCATCTGACTTCTCATCCCAAACAGAAGGTGATAGAAGCACTTGTAAAGCTGTCAGGCATAGAAGATCAGCCTAAAGTTCAGCCAAATACTATAACTCCACCTGTTACGCCACAAATACATACTGCAGGAACCAGCCAGgtAAATTCAACAATAGTGAACCAATCATGGAATCAGCCAGCTCCTGTTCCACTGGGGTCCCCTTCCAATGTAAATCCGTTACATGGAAaccatgtttttatttatcaacaAAGCATGAGTACTACTTCCCCGCAACCAAACGTTTTGCAAGTAAACCATCCGTTATCTCAACAATATGTTTACCAGCCAGCCGTTTTCAATCCCCAAATGATGCCATATGTATACCAACAGCAACAAGTAATTTTATCCAGTAATTCCTTACACCCACAAGTAAGAGCATTGCCTTTCGAACCCCCTAACGGTAATTCTGAGATACAGCCAGAAGCTGTTGTAGCAGAAAATAATAATCAGAAAGAGAATGTTAATGAGGCAAGGAAAGAGAGTATTGATTTAACTGTTGAAGATACACTAGAGAAACCTACCTCACAAGTACTAACCAAAGAAGATATCGAAGGTTTACATCATGAACTTGACATCAAAACTATAGAAGATTTTGAAGAAGATCAATTACAAGTGAACGATATACCTCCAGAAGAGTTCCAGGAAGTAGAAAGTGGAAGTGAAGAAGAATGTAATCAAGAATCAGAAAATGTAGATAGAGAAGAAATTGCAGATTCCGCTAATTCTCATCAAACAGATTGGAAGACTGATTCTGAATTAAGTAAAGCTTGCCAAACGCAAAATGGAATTAGCACTTCACCTGTACCTCAAAGTGAAACAGATATACAGCAGCAAccttttgtttcattagaccagCCTGAATATTTCTATGTAAGACCCCAGAGTAGCAACTATCCCGATAACTTCCATAATGAACCAAGCAATAGTGTTTCAGTGCCATTTACTTCACATCAAAAAGAAAGTGAAACTTTTGAACAATCTGATCCTATCTATACTTCCGCAAATATACTACATGGTAATGATCATCTAGATTTTGTTAATTTGGACGATATTGTTATTATTGGTGATTTTACTACTAATGCAGTTGCTTCGCAAGTTGAACATTTCGAACATACAATGCAAGATAGACCGGGAGTATTAATGACTATTGGCGATATTCCAGAACAGCAAAAAATTGACTATCAAGAACATAGAGATTTAGAAGAAAGTATGTCTAGAGGTAGTAGCTCCCATGTCAATATAAGAGCTGATGAAAAAATGCCAGCTAGAGGGGAGTTATCGGGGCAGGAGAGCATTGGAGGTAACAGTGATATAACTTGGAATAGATTGCAGTATCAAGAAGGTAGTTCCCGCATGTCCCATTCATATGAAATGATTGGAAGAGAATCTTGGGAGCATTCGGACAGTGAAAGTGTAGATACTTCTATTGTAAAGAGGCAAAATTCAACACAAGTATCTTGCGAACCTAATGATGACGATAACGATGTACCAACAATAATAAGTTATATTGGTCCACGTTTAAACTTCAAATGTTCAACTTGTGGTGAATGTTTTGAATCGTCTAAAGATAGAAGTGAGCACGAACAAGAAAGACACCCAGAAAAAGCGAAGAAGAGCACAATAGGGGGTGAAATTGgtaaaaaatctgtcaaaaagTTAACTATTAAACCTAAATCTGAAAAGCCTAAAGAAGAACCTAATTTTGATAATGTATTTACCAACAAATTCAAACTAGAGAATCCTATCGAGTCGCAGGCTGATCTTGTATCTTTAGAATCCACCGTTAAAATGGATGAGCTTCCACTACAACTCCCGAAAATTAAAAGTGTATGCTCGTTATGTGATTGTGTATTAGATAGTGTGAAAAGTCTCAAACAGCATCGATTGGAGGTTCATAGAGATCAATTGGGGATCAGGCACAAATGTCTTACTTGTGGGGAATACTTTCCTACTGAGTACACATATACAGATCACTTAAAAGTGCATCCTCTGGAATGCAGACTCTGTGGGAAGTTGTTTTATAGAAGACATAATATGAAGTTGCATATGAAGAGACATTTGGGGTTGAAACCGTACAAGTGTGAGTTGTGCGATAAATCATTTGTCACTAGACAGAAGCATGACGAACACAAGAATGTTCATACAGGCGACGCACCCATAAAATGCAACCTTTGCGACGAAAAATTCAGAAGACATTCCAATCTAGTCCAGCACCGCAACCGTCACCACTTCCAGCTAAAGAAAAAAGTCAAAGATTACATCTGTCATTGCGGTGAAATATTCCACTCCAAGAAAAAACTGGCCTGGCACAAGGAAATTCACGACGCAAAACCGAAAGCGTGCAGCCAATGCAGCGAGAAGTTCCTACACATGTCGAGTCTAACCCGGCACATGCGCCGAGCACACAACGACAAGTTCCTTCCAGAAGAAAACAGACAGAACGAAAATGTCGAGTGTCCGATTTGCAAGGGTGTTTATTTGAAGTCTTCTTTGGACGTGCATATCAAGAACCACAGCGGAACGAGACCGTACACTTGTCTAATGTGCAACAAAGACTTTACGACAAAGTGGAATCTCAAATTACACAAGTGGACTCACGCCAGTAGGACTACAAAACCGTACAAGTGCGACCAATGCAAAGGAGCTTTTATAAGGGAATCCGACTACATCGCCCACATGAACTCGCATAAAAGCGTCCGACCGTACACCTGCAATTACTGCGGAGCCCAATTTATTAGAAAGTACAACTGCCTGCGACATGTTAAGGAGCACGAGAACGATAAAACTTTCAATTGTACGGTATGCGGTAAGTCTTTTCACAGATCTTATTATCTCAAAGATCACATGCGGGTGCATAGCGGAGTTAGGCCGTATACCTGTCATATATGCGGGAAAACTAGCACTACCAAGTCTAATCATAACAAACACGTACAAATTCATCATGCGCGAGAACCTGTTAGTACAGAAAATTAA
Protein Sequence: MDSINIVCPVCTLYLRPGITLKQHLTSHPKQKVIEALVKLSGIEDQPKVQPNTITPPVTPQIHTAGTSQVNSTIVNQSWNQPAPVPLGSPSNVNPLHGNHVFIYQQSMSTTSPQPNVLQVNHPLSQQYVYQPAVFNPQMMPYVYQQQQVILSSNSLHPQVRALPFEPPNGNSEIQPEAVVAENNNQKENVNEARKESIDLTVEDTLEKPTSQVLTKEDIEGLHHELDIKTIEDFEEDQLQVNDIPPEEFQEVESGSEEECNQESENVDREEIADSANSHQTDWKTDSELSKACQTQNGISTSPVPQSETDIQQQPFVSLDQPEYFYVRPQSSNYPDNFHNEPSNSVSVPFTSHQKESETFEQSDPIYTSANILHGNDHLDFVNLDDIVIIGDFTTNAVASQVEHFEHTMQDRPGVLMTIGDIPEQQKIDYQEHRDLEESMSRGSSSHVNIRADEKMPARGELSGQESIGGNSDITWNRLQYQEGSSRMSHSYEMIGRESWEHSDSESVDTSIVKRQNSTQVSCEPNDDDNDVPTIISYIGPRLNFKCSTCGECFESSKDRSEHEQERHPEKAKKSTIGGEIGKKSVKKLTIKPKSEKPKEEPNFDNVFTNKFKLENPIESQADLVSLESTVKMDELPLQLPKIKSVCSLCDCVLDSVKSLKQHRLEVHRDQLGIRHKCLTCGEYFPTEYTYTDHLKVHPLECRLCGKLFYRRHNMKLHMKRHLGLKPYKCELCDKSFVTRQKHDEHKNVHTGDAPIKCNLCDEKFRRHSNLVQHRNRHHFQLKKKVKDYICHCGEIFHSKKKLAWHKEIHDAKPKACSQCSEKFLHMSSLTRHMRRAHNDKFLPEENRQNENVECPICKGVYLKSSLDVHIKNHSGTRPYTCLMCNKDFTTKWNLKLHKWTHASRTTKPYKCDQCKGAFIRESDYIAHMNSHKSVRPYTCNYCGAQFIRKYNCLRHVKEHENDKTFNCTVCGKSFHRSYYLKDHMRVHSGVRPYTCHICGKTSTTKSNHNKHVQIHHAREPVSTEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00459218;
90% Identity: iTF_00736087;
80% Identity: -