Basic Information

Insect: Galerucella nymphaeae
Gene Symbol: Zfpm1
Assembly: GCA_963978555.1
Location: OZ021705.1:24352787-24356744[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.1 6.4e+02 2.3 0.1 2 23 7 28 6 28 0.91

2 15 0.019 2.9 9.7 2.4 1 23 529 552 529 552 0.88

3 15 0.2 30 6.5 0.7 2 23 630 652 629 652 0.94

4 15 0.0016 0.25 13.0 1.8 1 23 660 682 660 682 0.98

5 15 0.0004 0.061 14.9 4.0 2 23 685 706 684 706 0.97

6 15 0.085 13 7.6 2.4 1 23 712 734 712 734 0.81

7 15 6.5e-05 0.01 17.4 5.5 2 23 741 762 740 763 0.95

8 15 0.51 78 5.2 2.8 5 23 776 794 775 794 0.96

9 15 0.0052 0.81 11.4 2.5 3 23 801 822 800 822 0.97

10 15 0.047 7.3 8.4 0.1 2 23 838 858 837 858 0.96

11 15 0.00024 0.037 15.6 1.6 1 20 864 883 864 886 0.92

12 15 7.4e-05 0.011 17.2 0.2 1 23 894 916 894 916 0.99

13 15 0.0019 0.3 12.8 3.2 1 23 922 944 922 944 0.97

14 15 6.5e-07 0.0001 23.7 3.6 1 23 950 972 950 972 0.98

15 15 0.00089 0.14 13.8 7.2 1 23 978 1000 978 1001 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.1	6.4e+02	2.3	0.1	2	23	7	28	6	28	0.91
2	15	0.019	2.9	9.7	2.4	1	23	529	552	529	552	0.88
3	15	0.2	30	6.5	0.7	2	23	630	652	629	652	0.94
4	15	0.0016	0.25	13.0	1.8	1	23	660	682	660	682	0.98
5	15	0.0004	0.061	14.9	4.0	2	23	685	706	684	706	0.97
6	15	0.085	13	7.6	2.4	1	23	712	734	712	734	0.81
7	15	6.5e-05	0.01	17.4	5.5	2	23	741	762	740	763	0.95
8	15	0.51	78	5.2	2.8	5	23	776	794	775	794	0.96
9	15	0.0052	0.81	11.4	2.5	3	23	801	822	800	822	0.97
10	15	0.047	7.3	8.4	0.1	2	23	838	858	837	858	0.96
11	15	0.00024	0.037	15.6	1.6	1	20	864	883	864	886	0.92
12	15	7.4e-05	0.011	17.2	0.2	1	23	894	916	894	916	0.99
13	15	0.0019	0.3	12.8	3.2	1	23	922	944	922	944	0.97
14	15	6.5e-07	0.0001	23.7	3.6	1	23	950	972	950	972	0.98
15	15	0.00089	0.14	13.8	7.2	1	23	978	1000	978	1001	0.96

Sequence Information

Coding Sequence: ATGGATTCAATTGATATAGTTTGTCCAGTGTGTACCTTATATTTAAGGCCAGGCATAACTTTGAAACAGCATCTGACATCTCATCCCAAACAGAAGGTGATAGAAGCACTTGTAAAGCTGTCAGGCATAGAAGATCAGCCTAAAGCTCAGACAAATACTACACCTCTTCCTGTTACACCACAAATACATACAGCAGGAACCAGCCAggtAAATTCAACAATTGTAAATCAATCATGGAATCAGCCAGCACCTGTTCAACTGGGGTCCCCCTCTAATGTAAATCCATTACATGGAAACCACGtttttatttatcaacaaaGCATGAGTACTACTTCCCCGCAACCAAATGTTTTACAAGTAAACCATCCGCTATCCCAACAATATGTTTACCACCCTGCCATTTTCAATCCCCAAATGATGCCATACGTATACCAACAGCAACAAGTTATTTTATCCAGTAATTCCCTACACCCACAAGTAAGAGCATTGCCTCTTGAACCTCCTAATGATAATTCTACTATACAACCAGAAGCTGTTGTACCAGAAAATAATAATCAGAAAGAGACAAGGAAAGAGAGTATTGATTTAACTGTCGAAGAGAAATCTACCTCAAAAGTACTAACCAAAGAAGATATTGAAGGTTTACATCATGAACTTGACATTAAAACTAtagaagattttgaagaaaatCAACTACAAGTGAACGATATACCTCCAGAGGAATTCCATGAAATAGAAAGCGGAAGCGAAGAAGAATGTAACCAAGAATCAGAAAATGTAGATAGAGAAGAAATTGCAGATTCCTCTAACTCTCATCAAACAGATTGGAAGACTGATTCTGAATTGAGTAAAGCATGTCAAACGCAAAGTGGAATTAGTAGTTCACCTGTACCTCAAATTCAAACAGACATTGAGCAGCCACCTTTTGTTGCATTGGACCAGCCTGAATATTTCTATGTAAGACCACAGAACAGCAACTTCCATAATGAACCAAGTGTTTCAGTGCCGTTTACTTCGCATCCAAAAGAAAGTGAAACATACGAACAATCTGATCCTATCTACACCTCCGCTAATATACTACACGGTAATGATCATCTAGATTTCGTTAATTTGGAtgatattgttattattggtgATTTTACTACAAATGCAGTTGCTTCGCAAGTCGAACATTTCGAACATACAATGCAAGATAGACCTGCAGTATTAATGACTATAGGCGATATTCCAGAACAGCAAAAAATTGACTATCAAGAACATAGAGATTTAGAAGAAAGCATGTCTAGAGGTAGCTCCCATGTCAATATAAGAGCTGATGAAAAAATGCCAGCTAGAGGAGAGTTATCAGGACAGGAAAGCATAGGAGGTAACAGCGATATAACTTGGAATAGATTACAGTATCAAGAAGGTAGTTCACACATGTCCCATTCGTATGAAATGATTGGAAGGGAATCTTGGGAGCATTCGGACAGCGAAAGCGCAGATAATTCTATTGTAAAGAGACAAAATTCAACGCAAGTATCTTGTAACGATTACGACAACGATGTACCGACAATAATAAGTTATATCGGTCcacgattaaattttaaatgttcaacTTGTGGTGAATGTTTTGAATCGTCTAAAGATAGAAGTGAGCACGAACTGGAAAGACATCCAGAAAAAGCGAAGAACAGTATAATTGGAGGTGAAATCGgtaaaaaatctgtcaaaaaattaattattaaacccAAATCTGAAAAACCTAAAGAAGAACCTAATTTTGATAATGTATTTACCAACAAATTCAAACAAGAGAACCCCATGGAAACGCAGACTGAAATTGCAGCTTTAGAATCCACCGTTAAAATGGATGAGCTTCCATTACAACTCCCGAAAATTAAAAGTGTTTGCTCGTTATGCGATTGTGTATTGGATAGCGTGAAAAGTCTCAGACAGCATCGAATGGAGGTTCACAAAGATCATTTTGGGATCAGGCACAAATGTCTTACTTGTGGGGAATACTTTCCCACCGAGTATACATATACAGATCACTTGAAAGTGCATCCTTTGGAATGTAGACTCTGCGGGAAGTTGTTTTATAGGAGACATAATATGAAGTTGCATATGAAGAGGCATTTGGGGTTGAAACCGTACAAGTGCGACTTGTGCGAGAAATCTTTTGTCACTAGACAGAAGCATGATGAACATAAAAATGTTCATACAGgcGACGCTCCAATAAAATGCAACCTTTGCGACGAAAAATTCCGAAGACATTCCAATCTAGTCCAGCACCGTAACCGACACCACTTCCAGTTGAAGAAAAAAGTCAAAGACTACATCTGTCATTGCGGTGAAATATTCCACTCCAAGAAAAAACTAGCTTGGCACAAGGAAATCCACGACGCAAAACCGAAAGCGTGCAGCCAATGCAGCGAAAAGTTCCTACACATGTCGAGTCTAACCCGACACATGCGCAGAGCACACAACGACAAATTCCTTCCGGAAGAAAACAGACAGAACGAAAATGTAGAGTGTCCGATTTGCAAGGGGGTTTATTTGAAGTCTTCTTTGGAAGTGCATATCAAAAACCACAGTGGAACGAGACCGTACACTTGTCTTATGTGCAACAAAGACTTTACGACAAAGTGGAATCTCAAATTACACAAGTGGACGCATGCCAGTAGGACTACGAAACCGTACAAGTGCGACCAATGCAAAGGAGCTTTTATAAGGGAATCCGATTACATCGCTCACATGAACTCGCATAAAAGCGTCCGGCCGTACACTTGTAATTACTGCGGAGCTCAATTTATCAGAAAGTATAACTGCCTGCGACACGTCAAGGAGCACGAGAACGATAAAACGTTCAATTGTACCGTATGCGGTAAGTCTTTCCACAGATCCTATTATCTCAAAGATCACATGCGGGTGCATAGCGGAGTTAGGCCGTATACTTGTCACATATGCGGGAAAACTAGTACTACTAAGTCTAATCATAATAAACACGTACAAATTCATCATGCGCGAGAACCTGTCAGTACGGAAAATTAA
Protein Sequence: MDSIDIVCPVCTLYLRPGITLKQHLTSHPKQKVIEALVKLSGIEDQPKAQTNTTPLPVTPQIHTAGTSQVNSTIVNQSWNQPAPVQLGSPSNVNPLHGNHVFIYQQSMSTTSPQPNVLQVNHPLSQQYVYHPAIFNPQMMPYVYQQQQVILSSNSLHPQVRALPLEPPNDNSTIQPEAVVPENNNQKETRKESIDLTVEEKSTSKVLTKEDIEGLHHELDIKTIEDFEENQLQVNDIPPEEFHEIESGSEEECNQESENVDREEIADSSNSHQTDWKTDSELSKACQTQSGISSSPVPQIQTDIEQPPFVALDQPEYFYVRPQNSNFHNEPSVSVPFTSHPKESETYEQSDPIYTSANILHGNDHLDFVNLDDIVIIGDFTTNAVASQVEHFEHTMQDRPAVLMTIGDIPEQQKIDYQEHRDLEESMSRGSSHVNIRADEKMPARGELSGQESIGGNSDITWNRLQYQEGSSHMSHSYEMIGRESWEHSDSESADNSIVKRQNSTQVSCNDYDNDVPTIISYIGPRLNFKCSTCGECFESSKDRSEHELERHPEKAKNSIIGGEIGKKSVKKLIIKPKSEKPKEEPNFDNVFTNKFKQENPMETQTEIAALESTVKMDELPLQLPKIKSVCSLCDCVLDSVKSLRQHRMEVHKDHFGIRHKCLTCGEYFPTEYTYTDHLKVHPLECRLCGKLFYRRHNMKLHMKRHLGLKPYKCDLCEKSFVTRQKHDEHKNVHTGDAPIKCNLCDEKFRRHSNLVQHRNRHHFQLKKKVKDYICHCGEIFHSKKKLAWHKEIHDAKPKACSQCSEKFLHMSSLTRHMRRAHNDKFLPEENRQNENVECPICKGVYLKSSLEVHIKNHSGTRPYTCLMCNKDFTTKWNLKLHKWTHASRTTKPYKCDQCKGAFIRESDYIAHMNSHKSVRPYTCNYCGAQFIRKYNCLRHVKEHENDKTFNCTVCGKSFHRSYYLKDHMRVHSGVRPYTCHICGKTSTTKSNHNKHVQIHHAREPVSTEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00459218;
90% Identity: iTF_00911364;
80% Identity: -