Lcap005083.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- ECU03_0790
- Assembly
- GCA_949126875.1
- Location
- OX421396.1:23151225-23155382[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.86 1.8e+02 4.5 0.3 2 23 198 219 197 219 0.93 2 13 0.0023 0.46 12.6 3.3 2 23 227 249 226 249 0.96 3 13 0.00014 0.029 16.5 0.4 1 23 362 384 362 384 0.98 4 13 0.00026 0.054 15.6 3.3 1 20 388 407 388 409 0.93 5 13 0.00017 0.035 16.2 1.9 2 23 415 437 414 437 0.96 6 13 0.14 28 7.1 2.9 2 21 440 459 440 460 0.92 7 13 1.9e-06 0.00038 22.4 2.4 1 23 470 492 470 492 0.98 8 13 0.0014 0.29 13.3 1.5 1 23 498 520 498 520 0.98 9 13 7.9e-07 0.00016 23.5 1.3 1 23 525 548 525 548 0.96 10 13 8.8e-05 0.018 17.1 2.2 2 23 555 576 555 576 0.97 11 13 0.00046 0.095 14.8 3.3 2 23 583 604 582 605 0.95 12 13 0.031 6.3 9.1 0.6 1 23 622 645 622 645 0.94 13 13 0.0019 0.38 12.9 2.1 1 23 673 696 673 696 0.96
Sequence Information
- Coding Sequence
- ATGCAGATTTGTGGAATATGTGGAAGTAATCATTCCCCTATGGATTGTGAAATAATTCAAATAGTCTCTCATGTTCCTGACAAAATAATACCACCCAAAGCTCGATTGACTGTACCTGAAGATTTGGAATTAAGAAAAATGGCAGATGGTACTTACAATATAATTGCTTTACGTCTTATTGACAAAGGGACACAATTTGGTCCATTACAGGCTAAAAAACTGTGTTCACTGCTACCGACAATTAATTTTCCCATATGTCTGTTTTATAATACTGAAGGTGATTTATCTGAATATTATTTAGATACTAATGATGAAAATGAATGTAACTGGATGATGTTTGTTAATTATGCCAAAGATTTTGAggaacaaaatttaatttgttaccAAGATGGAGAGGatatatattttgttacaaTTAAAGACATTTCTTTGAATGAAACCTTGAAAATATGGTATTCTCCTTACTATGCAACTAAAATGAATAAGGATATTTTAATAcccattaataaaaataaacaaaatttaaaaagtagtAGTTTTAaagATCATTTAGCTAGAAATAAAAGTTCAATTACATCAAGAGAAATCTGGAGTTGTAAATTTTGTGGAAAGTTGGAGAAAAATCTTTCAGAATTTGCATTGCACTTGTTACAACATTATcattttaaaacaaagaaatattGTCACATATGCAAACTTCTTTTTCGAAAAAAGGAAGGATATCAAAAACACATGAAAATTATGCACTCAACTGATGTAACACTGGACTCTTCAGGACAAGTAAACGAAAAAACCACCTTATTACAAAATCCTGAAAAAAAATCATCCCAGAATTTGCCAAAAGAATCATACATTGGAGGCCCTCTTCTATTAAACGAATTATTGAATGACAGTATGGATAATAATGGTCTAACCCTCAATTCAAATACTGATATGAATCACATGGATTTGACAGAAATAGAAAACCATAACAATCTTTTTGACaatgaaaacttaaatttaaacATGGAATATATACTTCCTGATAATGAAAGAGAAAtggataatttcaattttgaattaGTGCCTCCTGAAACTGAACAATTTGTCTGTGATATTTGTCTCAAACCGTTTAAACATTTAAAAGCTGTGATTTGGCATATGAATATGCATATTGGAAATTTTACTTGTTTCGAGTGTAATAAGgtattttCGAGAAAAGAAAATTTAGATTCCCATTCTTGTAAAAGGTTCTACAAATTACAATGTACCCTGTGTCAGAAATTGTTTTACCAAAAGAAATACCTCACGCTACATATGAAAGTCAGTCACACTAACTACTGTAAATTTTGTAAACAAACTTTCGAATCTGGAGAACAATTACAGAATCATAAATGTtcggaaaaagaaaaaagtgctATAATTAAATATCCATGCAGTGAATGTCCAAAAGTATTtaatcataaaaataatttgaaaattcacaaAAACCGTCATCAACAATCAGAGAAGTATAATTGTCcaatatgtaataaaatattgggATCCTACAAGACTTACAAGAAACATACTAAAATGCATGAAGGGTGTAGTTATAAATGCGACATATGTGACAAGGTTTTCATGAGAAATGATCATTTAAAGGCACACAAAGAAAGTGTGCATTTTGCTGCTGGTCAGGAAACTTGCGAAATTTGCATGAAGTCTTTTAAGACAAAGAAACTATTGAGGAATCACATAAAACTGCACGACAGTACCGCTGCAGTTAAATGTCAATACTGTCCTTTAAAATACAAgcaactgaaatatttaaagCAACATATTAAAAATCACCACAATTTAAACAAAGTAACGCAATCTCCGTCATTGAACAATGATAAACAATTTGCATGTCCAAAATGTgataagaaaatgaaattagaGTATTCTGTTAAACGACATCTTGAAATATTCCATGGCGAATCTAAAACAGATTACAAATATGTTAAAAAAGATAGGAGAACTGAACAGAAAAAGGTGTCGATAAGTATTATGCCATTTTCGTGTCCGAAGTGcgacaaaaaaatgaaacacGAATATTCGGTTAAGCGCCATATTGAATCTGTGCATCCTGAATATAAAGGCAAatacaaaactgtcaaaatgaGAACGGAACAGAACAAACAAGCAGAAGATCTCAAACAAGCTCTAGAAACTATCAACTATAACACCGATGAGATTAATCGCGAAATTACTATAGAAATTGATAAATTACTCAACAATCCAGATACTTACACGAGTGACAGTAATGATAGATTGGTAGAAAGTTTAATTAATACAGCAGTTAGTGAAAATAATTTGGATGATAACGGACAACAGAAGGATGCAATGTTATCAATGCCCGACTTAGATTTGGATCATGAATTAGGTTTAATTAGTCATACGAAAACAGTTACAATGTAA
- Protein Sequence
- MQICGICGSNHSPMDCEIIQIVSHVPDKIIPPKARLTVPEDLELRKMADGTYNIIALRLIDKGTQFGPLQAKKLCSLLPTINFPICLFYNTEGDLSEYYLDTNDENECNWMMFVNYAKDFEEQNLICYQDGEDIYFVTIKDISLNETLKIWYSPYYATKMNKDILIPINKNKQNLKSSSFKDHLARNKSSITSREIWSCKFCGKLEKNLSEFALHLLQHYHFKTKKYCHICKLLFRKKEGYQKHMKIMHSTDVTLDSSGQVNEKTTLLQNPEKKSSQNLPKESYIGGPLLLNELLNDSMDNNGLTLNSNTDMNHMDLTEIENHNNLFDNENLNLNMEYILPDNEREMDNFNFELVPPETEQFVCDICLKPFKHLKAVIWHMNMHIGNFTCFECNKVFSRKENLDSHSCKRFYKLQCTLCQKLFYQKKYLTLHMKVSHTNYCKFCKQTFESGEQLQNHKCSEKEKSAIIKYPCSECPKVFNHKNNLKIHKNRHQQSEKYNCPICNKILGSYKTYKKHTKMHEGCSYKCDICDKVFMRNDHLKAHKESVHFAAGQETCEICMKSFKTKKLLRNHIKLHDSTAAVKCQYCPLKYKQLKYLKQHIKNHHNLNKVTQSPSLNNDKQFACPKCDKKMKLEYSVKRHLEIFHGESKTDYKYVKKDRRTEQKKVSISIMPFSCPKCDKKMKHEYSVKRHIESVHPEYKGKYKTVKMRTEQNKQAEDLKQALETINYNTDEINREITIEIDKLLNNPDTYTSDSNDRLVESLINTAVSENNLDDNGQQKDAMLSMPDLDLDHELGLISHTKTVTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01106634; iTF_00736078; iTF_00459215;
- 90% Identity
- -
- 80% Identity
- -