Ocom074923.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- Prdm15
- Assembly
- GCA_035357415.1
- Location
- CM068993.1:1140887-1148296[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.86 3.1e+02 4.5 0.3 2 23 200 221 199 221 0.93 2 14 0.00072 0.26 14.2 2.5 2 23 229 251 228 251 0.96 3 14 1.3e-05 0.0047 19.7 0.3 1 23 365 387 365 387 0.98 4 14 0.00013 0.048 16.5 1.3 1 19 391 409 391 409 0.97 5 14 0.079 29 7.8 2.9 2 23 418 440 417 440 0.95 6 14 0.011 4 10.4 2.7 2 21 443 462 443 463 0.93 7 14 1.4e-06 0.0005 22.7 1.3 1 23 473 495 473 495 0.97 8 14 0.0062 2.3 11.2 1.6 1 23 501 523 501 523 0.97 9 14 1.1e-06 0.00039 23.1 0.4 1 23 528 551 528 551 0.96 10 14 0.0022 0.81 12.6 0.5 2 19 558 575 558 576 0.96 11 14 0.00015 0.055 16.3 1.6 2 23 577 598 577 598 0.97 12 14 0.00011 0.039 16.8 2.8 2 23 605 626 604 627 0.95 13 14 0.001 0.36 13.7 1.1 1 23 641 664 641 664 0.97 14 14 0.0027 0.99 12.4 2.1 1 23 692 715 692 715 0.96
Sequence Information
- Coding Sequence
- atgcaGATTTGTGGAATTTGCGGAAGCAATCATTCTCCTATGGATTGTgatataattcaaataatctCTCATGTTCCTGATAAAGTTATACCACCTAAAGCTCGATTGACTGTACCAGAAGATTTGGAATTAAGAAAAATGGCAGATGGTACTTATAATATAATGGCATTACATACTATTAAAAAAGGAACACAGTTTGGTCCTTTGCAGGCAAAAAAACTGTGCTCACTATTACCCTCAATAAATTTtccagtttgtttattttctaacAATGATGGAGATTTATCTGAATATTATCTAGATACTAGTGATGAAAATGAATGCAACTGGATGATGTTTGTAAATCAAGCTAAGGATTttgaagaacaaaatttaatttgttatcaAgaTGGTGAAGATATATATTTTGTTACTATTAAGGATATTAGTTTAAATGAGGCATTAAAAATATGGTATTCTCCATATTATGCTACAAAAATGAATAAGGATACTTTAATACCTGTTAATAATAATCaggaaaatcaaaatttaaaaattaatagttttaaagATAATTTAGTGagaaataaaaactcaatttcaTCCAGAGAAATTTGGAGTTGTAAGTTTTGTGGCAAGTTGGAGAAAAATCTTTCAGAATTTGCATTGCATCTGTTACAACACTATCATTTCAAAACTAAGAAGTATTGCCACATATGCAACATTCTTTTTCGTAAAAAAGAAGGATATCAAAAGCATATGAAAATTCTGCATTCAACCAGTGTAACATTGGAATCCTCAGAACAATCAAATGATAAAAGCAACTTGATTCAAATACCTGAAAAATCATTCCAAACTATATCAAAAGAGACTTTCATTGGAGGCCCTCTTctattaaatgaattattaaatgataGTATGGATAATAATGGTCTAACTCTTAGTACTAATGCAGATGTGAATCAAATTCAAATGGATTTGATTGGAATAGAAAACCACAACATTCTCTTTgataatgaaaatttacatttgAATATGGAATACATACTTCCAGACAATGACAGAGAAAtggataattttaattttgagttGGTACCTTCTGAAACAGAACAATTTGTTTGTGATATTTGCCTTAAgccttttaaacatttaaaagcaCTAATTTGGCACATGAATGTACATATTGGTAATTTTACCTGTTTTGAGTGTAACAAGgtgTTTTCTCGAAAAGAAAACTTAGATTCTCATCCTTGCAAAACTTTCTACAAGTTGCAATGTACCCTATGCCAAAAACTGTTTTTCCAAAAGAAATACCTCAATTTCCACATGAAGCTAAACCACAGTAACTACTGTAAATTTTGCAAACAAATGTTTGAAAATAAAGAACAATTACAAGAGCATAGATgtttggaaaaagaaaaaagaagcaGCATTAAATATCCATGCAATGAATGTCCCAAAGTATTTAAATACAAGACCAATTTAAAGATTCACAAAAACCAACATCAACAAACAGAAAAATATAATTGTccaatttgtaataaaatattggGATCATATAAGACTtacaaaaaacattcaaaatcgCACGAGGGTTGCAGTTACAAATGCGACATATGCGACAAGGTTTTTATGAGAAATGATAGTTTAAAGGCACACAAAGAAAGCGTCCATTTTGCTGCTGGTcagGAAACATGCGAAATTTGTTTGAGATCATTTAAGACGAAGCAGCTGTTGAGGAACCacGAAACATGCGAAATTTGTTTGAGATCGTTTAAGACGAAGCAGCTGTTGAGGAACCACGTAAAACTACACGATAGTACTGCGGAAGTTAAATGTCAGTACTGTCCTTTGAAATACAAGCAACCAAAATACTTAAAGCAGCACATCAAGAATCATCACAGTGGCAACAAACCTGTCGTTTTAAATGGCGACAAACCTTACGCTTGTCCGAAATGTGATAAGAAAATGAAATTAGAATATTCTCTTAAAAGACATCTGGAAACATTCCATGGCGAATCTAAAGCggattataaatatcttaaaaaagACAGAAGAATAGAGCAGAAAAAAGTTTCTATTAGCATCATGCCGTTCTCGTGTCCCAAGTGCgacaaaaaaatgaaacacgAGTATTCAGTTAAACGTCATATCGACTCCGTTCATCCGGAGTATAAAGGCAAATACAAGACTGTCAAAACGAAAACCGAACAGAATAAACAAGTGGACGAACTTCAACAAGCTCTAGAAACCATCAACTACAACACCGATGAAATTAATCGCGAAATTACCATTGAAATCGATAAATTACTCAACAATCCAGAAACCTTTACGAGCGACAGTAATGATAGACTGGTGGAAAGTTTAATTAATAACGCAGTTAGCGAAATTAATTTGGATGATAACGGACAGTCACAAAAGGACGCCATGTTATCGATGCCTGATTTAGATTTGGATCACGACTTGGGTATAGTGGGTCATGCGAAAGACAGTTATAATTTAATTGGtgctaaataa
- Protein Sequence
- MQICGICGSNHSPMDCDIIQIISHVPDKVIPPKARLTVPEDLELRKMADGTYNIMALHTIKKGTQFGPLQAKKLCSLLPSINFPVCLFSNNDGDLSEYYLDTSDENECNWMMFVNQAKDFEEQNLICYQDGEDIYFVTIKDISLNEALKIWYSPYYATKMNKDTLIPVNNNQENQNLKINSFKDNLVRNKNSISSREIWSCKFCGKLEKNLSEFALHLLQHYHFKTKKYCHICNILFRKKEGYQKHMKILHSTSVTLESSEQSNDKSNLIQIPEKSFQTISKETFIGGPLLLNELLNDSMDNNGLTLSTNADVNQIQMDLIGIENHNILFDNENLHLNMEYILPDNDREMDNFNFELVPSETEQFVCDICLKPFKHLKALIWHMNVHIGNFTCFECNKVFSRKENLDSHPCKTFYKLQCTLCQKLFFQKKYLNFHMKLNHSNYCKFCKQMFENKEQLQEHRCLEKEKRSSIKYPCNECPKVFKYKTNLKIHKNQHQQTEKYNCPICNKILGSYKTYKKHSKSHEGCSYKCDICDKVFMRNDSLKAHKESVHFAAGQETCEICLRSFKTKQLLRNHETCEICLRSFKTKQLLRNHVKLHDSTAEVKCQYCPLKYKQPKYLKQHIKNHHSGNKPVVLNGDKPYACPKCDKKMKLEYSLKRHLETFHGESKADYKYLKKDRRIEQKKVSISIMPFSCPKCDKKMKHEYSVKRHIDSVHPEYKGKYKTVKTKTEQNKQVDELQQALETINYNTDEINREITIEIDKLLNNPETFTSDSNDRLVESLINNAVSEINLDDNGQSQKDAMLSMPDLDLDHDLGIVGHAKDSYNLIGAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00911351;
- 90% Identity
- -
- 80% Identity
- -