Gnym020446.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- ECU03_0790
- Assembly
- GCA_963978555.1
- Location
- OZ021710.1:13737731-13741921[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.37 58 5.6 0.4 2 23 198 219 197 219 0.95 2 13 0.0024 0.37 12.5 2.5 2 23 227 249 226 249 0.96 3 13 0.0015 0.24 13.1 0.2 2 23 361 382 360 382 0.97 4 13 2.6e-05 0.0041 18.6 2.1 1 20 386 405 386 407 0.93 5 13 0.0014 0.22 13.2 2.0 2 23 413 435 412 435 0.96 6 13 0.023 3.5 9.4 2.3 2 21 438 457 438 458 0.93 7 13 3e-06 0.00046 21.6 1.5 1 23 468 490 468 490 0.97 8 13 0.015 2.3 10.0 0.6 1 23 496 518 496 518 0.98 9 13 7.6e-07 0.00012 23.5 0.2 1 23 523 546 523 546 0.97 10 13 0.005 0.76 11.5 2.2 2 23 553 574 553 574 0.96 11 13 0.00083 0.13 13.9 1.3 2 23 581 603 580 603 0.96 12 13 0.037 5.7 8.7 0.3 1 23 620 643 620 643 0.94 13 13 0.015 2.2 10.0 2.9 1 23 671 694 671 694 0.97
Sequence Information
- Coding Sequence
- ATGCAACTTTGTGGAATATGTGGAAGCAATCATTCCCCTATGGATTGTGAAATCATTCAAATAGTCTCTCATGTTCCTGACAGAATGATACCACCCAAAGCTCGATTGACTGTACCTGAAGATTTGGAATTAAGAAAAATGGCAGATGATACTTACAGTATAATGACTTTACGGCTTATTGACAAAGGGACACAATTTGGTCCATTGCAGGCCAAAAAACTGAGCTCACTGTTACCAACAATAAATTTTCCCATATGTCTGTTTTATAATACTGAAGGAGATGAGTCGGAATATTATTTAGATACTAACGATGAAAATGAATGTAACTGGATGATGTTTGTTAATTGTGCCAAAGATTTTGaggaacaaaatttaatttgctACCAAGATGGAGaggatatatattttattacaattaaAGACATTTGTGAGAATGAGAGTTTGAAAGTATGGTATTCTCCTTACTATGCTACTAAAATGAATAAGGATATTTTAAtacctattaataaaaataaagaaaatttgaatacTAGTAGTCTTAAAGATAATTTAGATAGAAATAAAAGTTCAATTACATCAAGAGAAATATGGAGTTGtaaattttgtggaaagctgGAGAAAAATCTTTCAGAATTTGCACTGCATCTATTAAAACattatcattttaaaaataagaaatattgtCACATATGCAATCTTCTTTTTCGAAAAAAGGAAGGATATCTAAAACACATGAAAATTTTGCACTCAACTGATGTAATAATAGACTCTTCAGGGCAAGTAAAAGAAAAAGCCACCTTATTACAAATTCCTGAAAAAAATTCATCCCAGAATTTGCCAAAAGAATCAAATATTGGAGGCCCTCTTCTATTAAATGAGTTACTAAATGACAGTATGGATAATAATGGACTAACCCTCAACTCAAATACTGATATTAATCAAATGGATTTAATAGAAAaccataacaatatttttgacaatGAAAACTTGAATTTAAACATGGAATATATACTTCCTGATAATGAAAGAGAAATggataatttcaattttgaattaGTGCCTCCTGAAACTGAACAAATTGTCTGTGATATTTGTCTCAAACCGTTCAAACATATAAAAGCTGTGATTTGGCATATGAATATGCATATTGGAAATTTTACCTGTGTTGAGTGTAATAAGgtaTTTTCTCGAAAAGAAAATTTAGAATCCCATTCTTGTAAAAGGTTCTACAAATTACAATGTACCCTTTGTCAGAGATTGTTTTACCAAAAGAAATTCCTCACGCTACATATGAAAGTCAGTCACTCTAACTACTGCAaattttgtaaacaaacatttgAATCTGAAGAACAATTACAGGATCATACATGTTCAGAGAAAGAAAAAAGAGCTGTGATTAAATATCCATGTAGTGAATGTCCGAAAGTATTTAatcataaaaacaatttgacaaTTCACAAAAATCTTCATCAACAATCGGAGAAGTATAATTGTCCAATATGTAATCAAATATTGGGATCCTATAAGACTTACGTGAAACACACTAAAATGCATGAAGGATGTAGTTATAAATGCGACATATGTGAAAAGATTTTCGTGAGAAAAGATGAATTAAAGGTACACCAAGAAAGTGTGCATTTTCCTGATGGTCAGGAAACTTGTGAAATTTGCATGAAGTCATTTAAGACAAAGAAACTATTGGGAAATCACAAAAAACTACACGACAGCTCCGCTGCAGTTAAATGCCCATACTGTCCTTCAAAATACAagcaaatgaaatatttaaaacaacatatTAAAAACAACCACAATGTAAACAAAGTAACGCAATCTCTGTCACTGAACAATGATAAACAATTTGCATGTCCAAAATGTgataagaaaatgaaattagCGAATTCGGTTAGACGTCATCTCGCTATATTTCATGGCGAATCTAAATCagattataaatttttcaaaaaagataAAAGAACTGAACAGAAGAAGGTTTCGATAAGTATTATGCCATATTCGTGCCCGAAGtgcaacaaaaaaatgaaatacgaATGTTCGGTAAAGCGCCACATTGAAACGGTGCATCCTGAATATAAAGGCAAATACAAAACTGTTGAAATGAAAAAGGAGCAGAACAAACAAGCAGAAGATCTTAAACAAGCTATAGAAACCATCAGCTATAACACCGATGAGATTAATCGCGAGATTACAATAGAAATTGATAAATTACTCAATAATCCAGAAACTTATACGAGTGACAGTAATGATAGATTAGTAGAAAGTTTGATTAATACAGCGGTTAGTGAAAATAATTTGGACGATACTGGACAACAAAAGGAAGCAATGTTATCAATGCCCGATTTAGATTTGGATCATGAACTAGGTTTAATTGGTCATACGAAAATAGTCACAATGTAA
- Protein Sequence
- MQLCGICGSNHSPMDCEIIQIVSHVPDRMIPPKARLTVPEDLELRKMADDTYSIMTLRLIDKGTQFGPLQAKKLSSLLPTINFPICLFYNTEGDESEYYLDTNDENECNWMMFVNCAKDFEEQNLICYQDGEDIYFITIKDICENESLKVWYSPYYATKMNKDILIPINKNKENLNTSSLKDNLDRNKSSITSREIWSCKFCGKLEKNLSEFALHLLKHYHFKNKKYCHICNLLFRKKEGYLKHMKILHSTDVIIDSSGQVKEKATLLQIPEKNSSQNLPKESNIGGPLLLNELLNDSMDNNGLTLNSNTDINQMDLIENHNNIFDNENLNLNMEYILPDNEREMDNFNFELVPPETEQIVCDICLKPFKHIKAVIWHMNMHIGNFTCVECNKVFSRKENLESHSCKRFYKLQCTLCQRLFYQKKFLTLHMKVSHSNYCKFCKQTFESEEQLQDHTCSEKEKRAVIKYPCSECPKVFNHKNNLTIHKNLHQQSEKYNCPICNQILGSYKTYVKHTKMHEGCSYKCDICEKIFVRKDELKVHQESVHFPDGQETCEICMKSFKTKKLLGNHKKLHDSSAAVKCPYCPSKYKQMKYLKQHIKNNHNVNKVTQSLSLNNDKQFACPKCDKKMKLANSVRRHLAIFHGESKSDYKFFKKDKRTEQKKVSISIMPYSCPKCNKKMKYECSVKRHIETVHPEYKGKYKTVEMKKEQNKQAEDLKQAIETISYNTDEINREITIEIDKLLNNPETYTSDSNDRLVESLINTAVSENNLDDTGQQKEAMLSMPDLDLDHELGLIGHTKIVTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00911351;
- 90% Identity
- -
- 80% Identity
- -