Basic Information

Insect: Lochmaea capreae
Gene Symbol: -
Assembly: GCA_949126875.1
Location: OX421399.1:20347517-20361980[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.00018 0.038 16.1 1.0 2 23 254 276 254 276 0.97

2 21 0.0083 1.7 10.9 1.3 1 21 380 400 380 401 0.95

3 21 0.12 25 7.2 8.2 1 23 430 453 430 453 0.92

4 21 3.4 7e+02 2.6 0.0 6 20 464 478 464 480 0.94

5 21 0.028 5.7 9.2 0.3 1 22 486 507 486 509 0.90

6 21 0.00039 0.081 15.0 1.0 2 23 586 607 586 607 0.97

7 21 0.18 37 6.7 0.1 1 14 649 661 649 671 0.74

8 21 0.0039 0.8 11.9 0.3 3 23 676 696 675 696 0.97

9 21 0.002 0.42 12.8 0.2 3 21 727 745 727 749 0.92

10 21 0.0019 0.39 12.9 0.2 1 23 771 794 771 794 0.97

11 21 0.002 0.41 12.8 1.9 2 23 808 829 807 829 0.97

12 21 0.0026 0.52 12.5 8.3 1 21 858 878 858 880 0.94

13 21 0.00071 0.14 14.2 0.6 2 23 896 918 896 918 0.93

14 21 0.00078 0.16 14.1 0.8 1 23 935 957 935 957 0.97

15 21 0.00014 0.028 16.5 1.1 2 23 969 991 968 991 0.95

16 21 5.3e-05 0.011 17.8 0.1 1 23 1006 1028 1006 1028 0.95

17 21 1.7 3.5e+02 3.6 0.0 1 23 1075 1098 1075 1098 0.94

18 21 0.00025 0.051 15.7 1.4 2 23 1109 1130 1109 1130 0.97

19 21 2.8e-05 0.0058 18.6 0.9 1 23 1163 1186 1163 1186 0.97

20 21 5.6e-06 0.0011 20.9 1.1 1 23 1194 1216 1194 1216 0.98

21 21 0.00075 0.15 14.2 0.1 1 23 1231 1254 1231 1254 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.00018	0.038	16.1	1.0	2	23	254	276	254	276	0.97
2	21	0.0083	1.7	10.9	1.3	1	21	380	400	380	401	0.95
3	21	0.12	25	7.2	8.2	1	23	430	453	430	453	0.92
4	21	3.4	7e+02	2.6	0.0	6	20	464	478	464	480	0.94
5	21	0.028	5.7	9.2	0.3	1	22	486	507	486	509	0.90
6	21	0.00039	0.081	15.0	1.0	2	23	586	607	586	607	0.97
7	21	0.18	37	6.7	0.1	1	14	649	661	649	671	0.74
8	21	0.0039	0.8	11.9	0.3	3	23	676	696	675	696	0.97
9	21	0.002	0.42	12.8	0.2	3	21	727	745	727	749	0.92
10	21	0.0019	0.39	12.9	0.2	1	23	771	794	771	794	0.97
11	21	0.002	0.41	12.8	1.9	2	23	808	829	807	829	0.97
12	21	0.0026	0.52	12.5	8.3	1	21	858	878	858	880	0.94
13	21	0.00071	0.14	14.2	0.6	2	23	896	918	896	918	0.93
14	21	0.00078	0.16	14.1	0.8	1	23	935	957	935	957	0.97
15	21	0.00014	0.028	16.5	1.1	2	23	969	991	968	991	0.95
16	21	5.3e-05	0.011	17.8	0.1	1	23	1006	1028	1006	1028	0.95
17	21	1.7	3.5e+02	3.6	0.0	1	23	1075	1098	1075	1098	0.94
18	21	0.00025	0.051	15.7	1.4	2	23	1109	1130	1109	1130	0.97
19	21	2.8e-05	0.0058	18.6	0.9	1	23	1163	1186	1163	1186	0.97
20	21	5.6e-06	0.0011	20.9	1.1	1	23	1194	1216	1194	1216	0.98
21	21	0.00075	0.15	14.2	0.1	1	23	1231	1254	1231	1254	0.97

Sequence Information

Coding Sequence: ATGGCAGAAGCAGAAATTGTCGATTTCCAATCATGTTGTAGACTGTGTCTCACCGAAATAGTGGAAAGTATAAAGTCAATATTCGATGAAACAGTTGAAGACAGAAGGTTATCCGTAAAGATTCAGCAATCAGTTGCTATTAAGATAAATACTTCAGATAGACTATCGACGAAAGTGTGTGAACCATGCATAGAAAAAGTAACTGGTTGGTACAATTACAAAGAGCAATGTCTTCAGAATCAAAAAAAGTTGGAAGATTGGATAAATTCAAAAAGTGCAGCCGATCCAACCGAATCGACGGTGACACCCGAATTAACCCCTGCGCCCGAATTAACCGCTGCTCCCGAATTACCACCTGCTCCTGAATTAACCGTTGCGCCCGAATTAATCGTGGCGGCGGAATTAAACTCTTCATATAACAGTAGCAGTTCTACATCTATAGCAGATATGACCCTACAGATTAAAGAAGAACCTCAAGATCACATTGAAGAACCGCAAGATCACGTTCTCCAAGAAGACGTTCTAAACAACCCTTTAGACACGCTGGATTCGGAACTAGACCAACAGAACGATATTCGACCTGAACTTATACACCATAACCATGTGTTAGTCAAAACTGAACCTTTATATATGGACGGATTGGACGAACCCATGGAGGAAGAGTACAGTGAGTTTCCTCCTACTTTATCTCCTCATCATTTGGAAAATGGAGATGATTTACAAGAACCTTTAGTTGTCAGAACTTCCGCTTTCAATAGAACATGTAGCATTTGTGGCAAATTATTTAGTAATGCGGGAAACAAAAAAAAGCATGAAAGGATGCAGCATGGTCTTCACAATAACCTTTCTATCGCTACGCCAATAATTAACGgttTGTCTAACGGCGACGGCATACATGGCTCCCCAGTTCAAACAGAACAACAGCAAATCTTAAAAACCATGAGTTTCAAAGTATTAAAAACAACTCCTATAGAAACTCcagaaaatttaacaaaaatagaaaacagtTACGGTGAAAAATGCAAAGCTATGGTCAGTATGCATAAATCGTTAATTTGCGCATGTCATAATGTTCCCCATCAAAATTTGAAAGGATTACTATCCCATTTACGGGCTTTGAGGATTTGGTTTCCAGTTTTTACTTGTTATAATTGTATGATAACCTTTACGGATAGGTCCACGTTTACCAGACACATTTCAAGatGCCAGAGCGCACCGTTGGACACCATAACGAAACTGAGCGAACTAAAAATACGCACCGAAGTAAAAACTAGACTGTACCAAAACTTTAAATGCACTATATGCAAATTTATGTTCAGTTTTCACGAACATTTTTGCAAACACGTCGACGAAGACCACGCTATGTTGCAATTTCCGGTGCATTGTCCTTGTGGTAAGACTTGTGAAACTGAAGAAGAATATAAGGATCATGTATATGTTAGTTGTCTAGTGGAATTTTACTGTGACATATGCTTCGTTACTACGAAAACTCTGGATGATTTCCAGAAACATGCTGCAGGAGTTCATGATGATTCCGAAGGATTTATACTTCTTCAGGATGATAACTATAAAGTTAGAAAGCCTTCCATGCACATTAGTCCCACAGGAGTAGATGAAGGAGCGATAATTCAAGGTAAACGAGAGAGAAAAGCATCGTTTAAAACACCCCTGTACGATGAAGAATTAGACGAAATATTACCAACAAGTCTTGCATCTGCTACTTACTATACCCCCAAAACTGCTAATATTAATAGAGTCTGTCCTATTTGCTACAAAGAATATTCATCTTACAAAAATATGATGCGGCATTTCAAAACTCACAAAACCGAAGAAATTGTAAATCCTCAAGAACAACAGTTAGAACACGGTTTTGGAGATTTTCAAGACTTCCAAGACCAGTCACAAGAATCTCAAGACATGGATTTGGAAGATGAAGAGTCTTTCTATTCGTGTCCGGATTGTGGAGGAATGTTTAGCACTATAGAATGGAAGATACATTTGACAGAAAAACATCAGTCAAAAGCTTGTGGGGAATGTGGGAAATTTTTCCAATTCCAGACTGAACTTGATCAACATAGGAGTGTTCATTTGAATCTTAAGGTATATAGAGACTCTAAAACCCAGTCTTACAAAAGCACGATGATCAGTCCTGGTGGAGAAGATGACGAAATGTTGGGCTGCGAAATGTGCGACTTGATATTTACTTCCAAAGAAGATCTAATGACTCATCAGTTAGAACAAGGACACGCTGGAACTAGCAGCATGGAAGTCCCGGAAATCAAACCCGAAATTACTACCGCACCGAAGAAATATATATGCGACATTTGCGAACAAgaattcaataattataacgGTTTATGGGAGCATAACAGAACTAGACATCCAGAAAGGAAAACACCTCATGCTGATACGTACCCCAAACAGTGTAAGGATTGCGACAAAGTTTGTACAACTGGAGCAGCTTATTACAGACATAGACAGATACACGAAAAAATACCTACTGATGCGGGCGCTAGCAAAGCATCTTTACTTAAACCAAAGAAATCCGGTGAACCGGATGAAGAATCTTATCATACTTGTAAACGATGCTTCAAAGTATTTTCTAGTAAATATAACCTCAAGAACCACTTGAAATGTCATGGAATTAATATAAATCCAGTGAGTAAAAAACTGGTGAGAAAAGCAGTCTGCAAAGTGTGTCAGCATGTGTTCGATACAAACGAGGAACTTATCAGACATAAACAAGAAGCTCATAACAGTGTTGAAACTCCGATAGACGATATGGACATGGCGTCTTTAGTGTTTCCTTGTGATACCTGCGTTATGACATTCAACAGTAAAGTTGCTTTGAAGAAACACAAAGAAAAGCATAATTTGGAATATAAATCGCTTCACAGACAAGTGTATTGTAAATACTGCAAAATTTCATTTGAGAATTTCCAAAGTTTGACCAAACATATGCAATTAGAACACGACGAAAAAGTTACAGTGCCGCCTAAAGCAAAACCGAACGATTTCACTTGTTCAATCTGTCAAAAATCATTCCAATCCGCCGGTGCTCTCACAACACATATCGGCTGGCATAAACGAGCCCTAAACGACAGtagttcaaaattattaaaacacgTTCCTCCTCCTCTACCACCCCCAGCACCAGCAGTACAATTACCTCGATTGCATCAAGTAAATATTAAAGAAGAACCTATGGACGACGTTTCTAAATACCAATGCGATACTTGTCTGGCCGAATTACCAAATGACACTGCTCTGCAAGTTCATATTTTGGAGAAACACAGAAGCGTCAGCGCTATTATGTTGATCCCGCGCTGTAACACTTGCAATAAAGATTTCGCCACGCAAGACGAGTACGAGACGCATAAAAGATTGCATGATTTCTTGGAACGTCAAAAACAGCACGAACAAAAAATGCTGGTACAACAAGAAAGTCCATCATCACGAATGTCGCAGGCTAGCAAACAAAAGAGTTTTCCTTGCAAACATTGCAATGCAGCTTTCAGCAGGTCTGACACGCTAGGAGCTCACATAAGACAGTTCCACAAGGAGCACGTCCAGACGGAATTCAAATGTAACCAGTGCGACAGGGTATTCGAAAAACAAAACTCTCTTACAATTCATTTGAAAGTTCATGAGAAACAGAGAGCTGCCACGGCTCCTGCTGGAAAGCCACTGTTTTCTTGTTCTATTTGCAACATGGGATTCGATTTACCAAAGGATTTGCGAGCTCATACTATAACAGCTCATCCATTTTGA
Protein Sequence: MAEAEIVDFQSCCRLCLTEIVESIKSIFDETVEDRRLSVKIQQSVAIKINTSDRLSTKVCEPCIEKVTGWYNYKEQCLQNQKKLEDWINSKSAADPTESTVTPELTPAPELTAAPELPPAPELTVAPELIVAAELNSSYNSSSSTSIADMTLQIKEEPQDHIEEPQDHVLQEDVLNNPLDTLDSELDQQNDIRPELIHHNHVLVKTEPLYMDGLDEPMEEEYSEFPPTLSPHHLENGDDLQEPLVVRTSAFNRTCSICGKLFSNAGNKKKHERMQHGLHNNLSIATPIINGLSNGDGIHGSPVQTEQQQILKTMSFKVLKTTPIETPENLTKIENSYGEKCKAMVSMHKSLICACHNVPHQNLKGLLSHLRALRIWFPVFTCYNCMITFTDRSTFTRHISRCQSAPLDTITKLSELKIRTEVKTRLYQNFKCTICKFMFSFHEHFCKHVDEDHAMLQFPVHCPCGKTCETEEEYKDHVYVSCLVEFYCDICFVTTKTLDDFQKHAAGVHDDSEGFILLQDDNYKVRKPSMHISPTGVDEGAIIQGKRERKASFKTPLYDEELDEILPTSLASATYYTPKTANINRVCPICYKEYSSYKNMMRHFKTHKTEEIVNPQEQQLEHGFGDFQDFQDQSQESQDMDLEDEESFYSCPDCGGMFSTIEWKIHLTEKHQSKACGECGKFFQFQTELDQHRSVHLNLKVYRDSKTQSYKSTMISPGGEDDEMLGCEMCDLIFTSKEDLMTHQLEQGHAGTSSMEVPEIKPEITTAPKKYICDICEQEFNNYNGLWEHNRTRHPERKTPHADTYPKQCKDCDKVCTTGAAYYRHRQIHEKIPTDAGASKASLLKPKKSGEPDEESYHTCKRCFKVFSSKYNLKNHLKCHGININPVSKKLVRKAVCKVCQHVFDTNEELIRHKQEAHNSVETPIDDMDMASLVFPCDTCVMTFNSKVALKKHKEKHNLEYKSLHRQVYCKYCKISFENFQSLTKHMQLEHDEKVTVPPKAKPNDFTCSICQKSFQSAGALTTHIGWHKRALNDSSSKLLKHVPPPLPPPAPAVQLPRLHQVNIKEEPMDDVSKYQCDTCLAELPNDTALQVHILEKHRSVSAIMLIPRCNTCNKDFATQDEYETHKRLHDFLERQKQHEQKMLVQQESPSSRMSQASKQKSFPCKHCNAAFSRSDTLGAHIRQFHKEHVQTEFKCNQCDRVFEKQNSLTIHLKVHEKQRAATAPAGKPLFSCSICNMGFDLPKDLRAHTITAHPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00459154;
90% Identity: iTF_00736021;
80% Identity: -