Basic Information

Insect: Galerucella nymphaeae
Gene Symbol: -
Assembly: GCA_963978555.1
Location: OZ021709.1:10885240-10893105[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 2.8e-05 0.0044 18.6 0.8 2 23 251 273 251 273 0.97

2 21 0.0078 1.2 10.9 1.3 1 21 377 397 377 398 0.95

3 21 0.11 18 7.2 8.2 1 23 427 450 427 450 0.92

4 21 3.2 5e+02 2.6 0.0 6 20 461 475 461 477 0.94

5 21 0.026 4 9.2 0.3 1 22 483 504 483 506 0.90

6 21 0.00037 0.057 15.0 1.0 2 23 583 604 583 604 0.97

7 21 0.17 26 6.7 0.1 1 14 647 659 647 669 0.74

8 21 0.0027 0.42 12.3 0.4 2 23 673 694 672 694 0.96

9 21 0.00063 0.097 14.3 0.1 2 21 724 743 723 747 0.90

10 21 0.0018 0.28 12.9 0.2 1 23 769 792 769 792 0.97

11 21 0.0019 0.29 12.8 1.9 2 23 806 827 805 827 0.97

12 21 0.0024 0.37 12.5 8.3 1 21 856 876 856 878 0.94

13 21 0.00066 0.1 14.2 0.6 2 23 894 916 894 916 0.93

14 21 0.00073 0.11 14.1 0.8 1 23 933 955 933 955 0.97

15 21 0.00013 0.02 16.5 1.1 2 23 967 989 966 989 0.95

16 21 5e-05 0.0077 17.8 0.1 1 23 1004 1026 1004 1026 0.95

17 21 1.6 2.4e+02 3.6 0.0 1 23 1072 1095 1072 1095 0.94

18 21 0.00013 0.02 16.4 2.1 2 23 1106 1127 1106 1127 0.97

19 21 2.7e-05 0.0041 18.6 0.9 1 23 1161 1184 1161 1184 0.97

20 21 5.2e-06 0.00081 20.9 1.1 1 23 1192 1214 1192 1214 0.98

21 21 0.0007 0.11 14.2 0.1 1 23 1229 1252 1229 1252 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	2.8e-05	0.0044	18.6	0.8	2	23	251	273	251	273	0.97
2	21	0.0078	1.2	10.9	1.3	1	21	377	397	377	398	0.95
3	21	0.11	18	7.2	8.2	1	23	427	450	427	450	0.92
4	21	3.2	5e+02	2.6	0.0	6	20	461	475	461	477	0.94
5	21	0.026	4	9.2	0.3	1	22	483	504	483	506	0.90
6	21	0.00037	0.057	15.0	1.0	2	23	583	604	583	604	0.97
7	21	0.17	26	6.7	0.1	1	14	647	659	647	669	0.74
8	21	0.0027	0.42	12.3	0.4	2	23	673	694	672	694	0.96
9	21	0.00063	0.097	14.3	0.1	2	21	724	743	723	747	0.90
10	21	0.0018	0.28	12.9	0.2	1	23	769	792	769	792	0.97
11	21	0.0019	0.29	12.8	1.9	2	23	806	827	805	827	0.97
12	21	0.0024	0.37	12.5	8.3	1	21	856	876	856	878	0.94
13	21	0.00066	0.1	14.2	0.6	2	23	894	916	894	916	0.93
14	21	0.00073	0.11	14.1	0.8	1	23	933	955	933	955	0.97
15	21	0.00013	0.02	16.5	1.1	2	23	967	989	966	989	0.95
16	21	5e-05	0.0077	17.8	0.1	1	23	1004	1026	1004	1026	0.95
17	21	1.6	2.4e+02	3.6	0.0	1	23	1072	1095	1072	1095	0.94
18	21	0.00013	0.02	16.4	2.1	2	23	1106	1127	1106	1127	0.97
19	21	2.7e-05	0.0041	18.6	0.9	1	23	1161	1184	1161	1184	0.97
20	21	5.2e-06	0.00081	20.9	1.1	1	23	1192	1214	1192	1214	0.98
21	21	0.0007	0.11	14.2	0.1	1	23	1229	1252	1229	1252	0.97

Sequence Information

Coding Sequence: ATGGCAGAAGCAGAAATTGTCGATTTCCAATCATGTTGCAGACTGTGTCTCACCGAAATTATGGAAAGTATAAAGTCAATATTCGATGAAACAGTTGAAGACAGAAGGTTATCCATAAAGATTCAGCAATCAGTATCTGTTAAGATAAATACTTCAGATAAACTATCGACGAAAGTGTGTGAACCATGTATAGAAAAAATAACTGGTTGGTACAATTACAAAGAGCAATGTCTTCAGAATCAAAAAAAGTTAGAAGATTGGATAAAATCAAAAAGTCCTGCCGATCTAGCCGAATCGACGGTGACATCTGAATTAACCCCTACACCCGCTGATCCCGAACAACCACCCACTTCTGAATTAACCGTTGCGCCCGAATCAATTTTAGCGACTGAATTGAACTCATCTTATAACAGTACCAGTTCTACATCTATAGCAGATATAAGTCTACAGATTAAAGAAGAACCACAAGATCACATTGAAGAACCCCAAGATCATGTTCTCCAAGAAAATGTTCTAAGCCATCCTTTAGATATGCTGAATGTGCAACTAGACCAACAGAATGACATTCGACCTGAACTTATACACCACAATCATGTGGTAGTTAAAACTGAACCTTTATATATGGATGGATTAGAGGAACCCATGGAGGAGGAGTACAGTGAGTTTCCTCCTACTTTATCTCCTCATCATTTGGAAAATGGAGATGATTTACAAGAACCTTTAGTTGTCAGAACTTCCGCTTTCAATAGAACATGTAGCATTTGTGGCAAAATATTTAGTAATGCGGGAAACAAAAAAAAGCATGAAAGGATGCAGCATGGTCTTCACAATAACATTTCTATCGCTACGCCAATAATTAACGgttTGACTAATGGCGACGGCATACATGTTTCCCCAGTTCAAACAGAACaacaaaaaatcttgaaaaccatgagcttcaaaatattaaaaacaatacCTATAGAAACTCcagaaaatttaacaaaaatagaaaacagtTACGGGGAAAAATGCAAAGCGATGGTCAGTATGCATAAATCGTTAATTTGCGCGTGTCATAATGTTCCGCACCAGAATTTGAAAGGATTATTATCCCATTTACGAGCTTTGAGAATTTGGTTTCCAGTTTTTACTTGCTATAATTGTATGATAACCTTTACGGACAGGTCAACGTTCACCAGACACATTTCAAGaTGCCAGAGCGCACCGTTGGACACCATAACGAAACTGAGCGAGCTCAAAAAACGCACCGAAGTAAAAACTAGACTGTACCAAAACTTTAAATGCACAATATGCAAATTTATGTTCAGTTTTCACGAACATTTTTGCAAACACGTCGACGAAGACCACGCCATGCTGCAATTTCCGGTGCATTGTCCTTGCGGCAAGACTTGTGAGACTGAAGAGGAATATAAGGATCATGTATATGTCAGTTGTCTAGTAGAATTTTACTGTGACATATGCTTCGTTACTACGAAAACTCTGGATGATTTCCAGAAACATGCTGCAGGAGTTCATGATGATTCCGAAGGATTTATACTTCTTCAGGATGATAACTATAAAGTTAGAAAACCTTCTATGCACATTAGTCCCACGGGAGTAGACGAAGGAGCGATCATTCAAGGTAAACGAGAGAGAAAAGCTTCGTTTAAAACACCCCTGTATGATGAAGAATTAGACGAAATATTACCAACAAGTCTTGCAACTGCTACTTACTATACCCCCAAAACTGCTAATAATAATAGAGTCTGTCCTATTTGCTACAAAGAGTATTCATCTTACAAAAATATGATGCGTCATTTCAAAACTCACAAAACCGAAGAAATGGTGAATCCTCAAGAACAACAACAGTTGGACCAAGGCTTTGGAGATTTTCAGGACCTCCAAGACCAATCACAAGAATCTCAAGACATGGATTTGGAAGATGAAGAGTCTTTCTATTCGTGTCCGGATTGTGGAGGAATGTTTAGCACTATAGAATGGAAGATACATTTGACAGAAAAACATCAGTCAAAACCTTGTGGCGAATGTGggaaatttttccaatttcagACTGAACTTGATCAACATAGGAGTGTTCATTTAAATCTTAAGgtatACAGAGACTCTAAAACCCAGTCTTACAAAAGCACGATGATAAGTCCTGGTGGAGAAGAAGACGAAATGTTGTCCTGCGAAATGTGCGACTTGATATTTACTTCCAAAGAAGATCTAATGACTCATCAGTTAGAACAAGGACATGCTGGAACTAGCAGCATGGAAGTCCCGGAAATCAAACAAGAAATTATCACCGCTCCAAAGAAATATATATGCGACATTTGCGAACAAGAATTCAATAATTATAACGGTTTATGGGAGCATAACAGAACTAGACATCCAGAAAGGAAAACACCTCACGCTGATACTTACCCCAAACAGTGTAAGGATTGCGATAAAGTTTGTACAACTGGGGCAGCTTATTACAGACATAGACAGATACACGAAAAAGTACCGACCGATGCTGGCGCTAGCAAAGCAACTTTACTTAAACCAAAGAAATCCGGTGAACTGGATGAAGAATCTTATCATACGTGTAAACGTTGCTTCAAAGTGTTTTCTAGTAAATATAACCTTAAGAACCACTTGAAATGTCATGGAATTAATATAAATCCAGTGAGTAAGAAACTGGTGAGAAAAGCTGTGTGCAAAGTGTGTCAGCATGTGTTCGATACAAACGAGGAGCTTATCAGACATAAACAAGAGGCTCATAACAGTGTTGAAACTCCGATAGACGATATGGACATGGCTTCTCTAGTGTTTCCTTGTGATACCTGTGTTATGACATTCAACAGTAAAGTAGCTTTGAAGAAACACAAAGAAAAGCATAGTTTGGAATATAAATCGCTTCACAGACAAGTGTATTGTAAATACTGCAAAATTTCATTTGAGAATTTCCAAAGTTTGACCAAACATATGCAATTGGAACACGACGAAAAAGTGAATGTACCGCCTAAAGCCAAGCCGAACGATTTTACTTGTTCGATCTGTCAAAAATCATTCCAATCAGCCGGTGCTCTTACAACACATATCGGTTGGCATAAACGAGCCCTAAACGACAGtagttcaaaattattaaaacacaTCCCTCCACCACCACCCTCAGCACCAGCAGTACAATTATCTCGATTGCATCAAGTGAGTATTAAAGAAGAACCTATGGACGACATTTCCAAGTACCAATGCGATACATGTTTAGCCGAATTACCGAATGACACTGCTCTGCAGGTTCATATTTTGGAGAAACACAGAAGTGTCAGCGCTATTATGTTGATTCCGCGCTGTAACACTTGCAATAAAGATTTCTCCACGCAAGACGAGTACGAGACACATAAAAGATTGCATGATTTCTTGGAACGTCAAAAACAGCACGAACAAAAAATGCTGGTACAGCAACAAGAAATTCCATCGCAACGTATGTCGCAGTCTAGCAAACAAAAGAGTTTTCCTTGCAAACATTGCAATGCAGCTTTCAGCAGGTCTGACACGCTAGGTGCTCACATAAGACAGTTTCACAAGGAGCACGTCCAGACGGAATTCAAATGTAACCAGTGCGACAGGGTATTCGAAAAACAAAACTCTCTTACAATTCATTTGAAAGTTCATGAGAAACAAAGAGCTGCTACGGCACCTGCTGGAAAACCACTGTTTTCTTGTTCAATTTGTAACATGGGATTCGATTTACCGAAGGATTTGCGAGCTCATACCATAACAGCTCATCCATTTTGA
Protein Sequence: MAEAEIVDFQSCCRLCLTEIMESIKSIFDETVEDRRLSIKIQQSVSVKINTSDKLSTKVCEPCIEKITGWYNYKEQCLQNQKKLEDWIKSKSPADLAESTVTSELTPTPADPEQPPTSELTVAPESILATELNSSYNSTSSTSIADISLQIKEEPQDHIEEPQDHVLQENVLSHPLDMLNVQLDQQNDIRPELIHHNHVVVKTEPLYMDGLEEPMEEEYSEFPPTLSPHHLENGDDLQEPLVVRTSAFNRTCSICGKIFSNAGNKKKHERMQHGLHNNISIATPIINGLTNGDGIHVSPVQTEQQKILKTMSFKILKTIPIETPENLTKIENSYGEKCKAMVSMHKSLICACHNVPHQNLKGLLSHLRALRIWFPVFTCYNCMITFTDRSTFTRHISRCQSAPLDTITKLSELKKRTEVKTRLYQNFKCTICKFMFSFHEHFCKHVDEDHAMLQFPVHCPCGKTCETEEEYKDHVYVSCLVEFYCDICFVTTKTLDDFQKHAAGVHDDSEGFILLQDDNYKVRKPSMHISPTGVDEGAIIQGKRERKASFKTPLYDEELDEILPTSLATATYYTPKTANNNRVCPICYKEYSSYKNMMRHFKTHKTEEMVNPQEQQQLDQGFGDFQDLQDQSQESQDMDLEDEESFYSCPDCGGMFSTIEWKIHLTEKHQSKPCGECGKFFQFQTELDQHRSVHLNLKVYRDSKTQSYKSTMISPGGEEDEMLSCEMCDLIFTSKEDLMTHQLEQGHAGTSSMEVPEIKQEIITAPKKYICDICEQEFNNYNGLWEHNRTRHPERKTPHADTYPKQCKDCDKVCTTGAAYYRHRQIHEKVPTDAGASKATLLKPKKSGELDEESYHTCKRCFKVFSSKYNLKNHLKCHGININPVSKKLVRKAVCKVCQHVFDTNEELIRHKQEAHNSVETPIDDMDMASLVFPCDTCVMTFNSKVALKKHKEKHSLEYKSLHRQVYCKYCKISFENFQSLTKHMQLEHDEKVNVPPKAKPNDFTCSICQKSFQSAGALTTHIGWHKRALNDSSSKLLKHIPPPPPSAPAVQLSRLHQVSIKEEPMDDISKYQCDTCLAELPNDTALQVHILEKHRSVSAIMLIPRCNTCNKDFSTQDEYETHKRLHDFLERQKQHEQKMLVQQQEIPSQRMSQSSKQKSFPCKHCNAAFSRSDTLGAHIRQFHKEHVQTEFKCNQCDRVFEKQNSLTIHLKVHEKQRAATAPAGKPLFSCSICNMGFDLPKDLRAHTITAHPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00459154;
90% Identity: iTF_00911296;
80% Identity: -