Lcap013837.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- su(Hw)
- Assembly
- GCA_949126875.1
- Location
- OX421398.1:34433557-34438195[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.6e-06 0.0014 20.6 0.1 2 23 237 259 236 259 0.95 2 13 0.00053 0.11 14.6 1.2 1 23 292 315 292 315 0.95 3 13 5.5e-05 0.011 17.7 0.3 1 23 321 343 321 343 0.99 4 13 1e-05 0.0021 20.0 0.8 2 20 349 367 348 369 0.96 5 13 1.2e-06 0.00026 22.9 2.6 1 23 380 402 380 402 0.97 6 13 0.00048 0.098 14.8 0.3 2 23 413 434 412 434 0.97 7 13 1.4e-05 0.0028 19.6 0.4 1 23 440 462 440 462 0.98 8 13 5.9e-07 0.00012 23.9 1.4 1 23 468 490 468 490 0.99 9 13 3.1e-06 0.00063 21.7 3.0 1 23 496 518 496 518 0.96 10 13 0.00033 0.068 15.3 2.7 1 23 524 547 524 547 0.97 11 13 3.1e-05 0.0063 18.5 0.5 2 23 554 575 553 575 0.96 12 13 2.5e-06 0.00052 21.9 0.2 1 23 581 603 581 603 0.98 13 13 4.4e-05 0.0091 18.0 3.5 2 23 610 632 609 632 0.94
Sequence Information
- Coding Sequence
- ATGGAGGAACCCCCATTAAAAGGAGGTTTCGTGAAAACAGAAATTCCAGACGTAAAACCAGAAATAATAGATGCAGGGGTAGAAGTATTGGAACAGAATACAAATTTCATAGAAATTGAAAGAACCAATGAAGAAAATGGCGAAGTACATACTGTTGTTCTTCAGAATATAGAGATACAAGAAAATGGAGATGATCAACTAGCTATCATAGGAAAACTTATCTCCCAAAATAATTCAGATGGTAATCTACGGATTGATACTTTGAAGGAAAATAACGTTGTACATACTTATATTATCAACAACACAGAGTACGAAGAGATAGACAGCGACGCGATTATTTACGAAGAAGTAGGAGACGATGAAAATTCCATAGAATATGTAATCGAAGAAGACATAGGTTATGAAGAAACTGTAGGCTCATCACAGGAAGAATACACCCACGTAGAAGTGGCCGACGAATACGAATTCAACGATGACACCGAAGAAGAAGAAGCAGCAGACGATCCTGAAACGCTGGACGTCGAAGATGAAGAGAGTCAAGCAGAAATGGACGTAATGGAATTGGACGATGACGAAAGTATGTCGGAAATTTCTATGGAAGAAAACAAACCGGAAGTAGTAGTGAGAAGACGGTTATTAGATGTCGGCGACAAAACCAAAAAAGTCGATAGAAAAAATGACTTGCAAAATTTTAATGAAGAGCAAATCGAGTGTGACATATGCCAGAAAATATTTCGTACTGCAGCTGCTCTAAAAAGACATATTACTGTAAACCACGATAAACGCGATGAATTTCAAGGAGACGATCCGTTAACCTTGGAATTGTGTCCTTGTTGCGGGGAACCATCTGATTCCGGTCACGTGaTCGGAGACTACAAATGCGACGACTGCGATAAACTGTTCGTCCAATTGAACTTTCTGCACCGCCACGCTAGTATTGAACATCCCAAAACCGATGTTTTTAAATGTTCCGAGTGTTTGAAACAATTTGATGCAAAAGAAGAGTTGATTGACCACATGAGAGTCCATTCCGTAAAAACCGTCAAGTGTTTAGAATGTAACAGGGAGTTTACTAGAAAATACCATTTAGAAAGACACATGGGACAAACGGGATGCATGGGACAGCCGAGAAAAGTCTTCGATTGCAGGGTTTGTCAAAAATGTTTTACGCGAAAAGATAATCTGGCGGAGCATTTGAGAATCCACGCCGGACAagtgaaaaagaagaagaaattaacTTGTTCTTACTGCGAAAAAGAATTCCAAGGACTTACGTTGTTGAATATTCACGTTCGCACTCATACAGGCGAAAAACCATACCCGTGCGATTTATGTTCAAAACGGTTTCCATCTAGCGGCGCTTGGAAGAAACATAGAAGGATGCATACCGGGGAAAAACCGTACCGGTGTAATCAATGCGATAGAACTTTCGCCGCAAAAGAGACACTCAACCGTCATCTACGTACCCACACCGGGGAAAAACCGCATCAATGTAAATTTTGCGGTAAAGCCTTCATCCAACCATCTCAACTTCGCGCTCACATCTTCCATCACACCGGCGAAAACGCCTACACTTGCCAATATTGCAGCAGGGCTTTTAACAGAAAGCTCCGTCTGACGACACACATAAAATACATGCACGAAGGTGCTGAACCACTGCCGTGTCTGAAATGcgataaaacttttttccgaAAGGAAGACGTTGCTAGGCATATGTTATCCCACAGCGGGGAAAAACCATTTGTCTGCGAAGTATGCCAAAAAGGTTTCGCAGTTAAATCCTCTTTGAAGATGCACATGAACATCCACCGAAAAGAACCGCCTTGCAGCTGTGAAACTTGCGGTAGGGCCTTTATAAGACGCGATTGTCTTATGAGACACATTAGAGCGCGACATCGAGATGTACTGGAAGATATTTTGGCCAACGCCGAAAAGAAGCGACTCCAACAACAATTACTAACAGCAGTTAGCGAATCGGCGAACGAAAGTCTAACGGAAAATATAATTTGGAACGAATTAACTTTAACTGAATCTATAAAAGAACTTTTAACTCTTCTAGTCGACGAAGAATGTCTTACGGAATTCGGTTATCCGGACGCTCCGGTGGACAGAGTGTTGGACTCGGTTATAAAACGATGCGGACACAGTCCCGCTTCTGAAGAAGATTTCGATTACATCGGAAGAATTAGAGAGAATGCCAAGCTGCTTTTCACCGTCGTTATCGACGATGAAGCTGTTAAAGCGTTGCTGAACAATCAAACTGTCGACGAAGTTATTTTGCACGTCTTAAGACTGGCCAAAAAGGAGAACAAATCTTAA
- Protein Sequence
- MEEPPLKGGFVKTEIPDVKPEIIDAGVEVLEQNTNFIEIERTNEENGEVHTVVLQNIEIQENGDDQLAIIGKLISQNNSDGNLRIDTLKENNVVHTYIINNTEYEEIDSDAIIYEEVGDDENSIEYVIEEDIGYEETVGSSQEEYTHVEVADEYEFNDDTEEEEAADDPETLDVEDEESQAEMDVMELDDDESMSEISMEENKPEVVVRRRLLDVGDKTKKVDRKNDLQNFNEEQIECDICQKIFRTAAALKRHITVNHDKRDEFQGDDPLTLELCPCCGEPSDSGHVIGDYKCDDCDKLFVQLNFLHRHASIEHPKTDVFKCSECLKQFDAKEELIDHMRVHSVKTVKCLECNREFTRKYHLERHMGQTGCMGQPRKVFDCRVCQKCFTRKDNLAEHLRIHAGQVKKKKKLTCSYCEKEFQGLTLLNIHVRTHTGEKPYPCDLCSKRFPSSGAWKKHRRMHTGEKPYRCNQCDRTFAAKETLNRHLRTHTGEKPHQCKFCGKAFIQPSQLRAHIFHHTGENAYTCQYCSRAFNRKLRLTTHIKYMHEGAEPLPCLKCDKTFFRKEDVARHMLSHSGEKPFVCEVCQKGFAVKSSLKMHMNIHRKEPPCSCETCGRAFIRRDCLMRHIRARHRDVLEDILANAEKKRLQQQLLTAVSESANESLTENIIWNELTLTESIKELLTLLVDEECLTEFGYPDAPVDRVLDSVIKRCGHSPASEEDFDYIGRIRENAKLLFTVVIDDEAVKALLNNQTVDEVILHVLRLAKKENKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01106596; iTF_00459148; iTF_00736016;
- 90% Identity
- iTF_00736016;
- 80% Identity
- -