Basic Information

Insect: Ophraella communa
Gene Symbol: su(Hw)
Assembly: GCA_035357415.1
Location: CM068988.1:23383919-23391271[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 6.4e-06 0.0023 20.6 0.1 2 23 227 249 226 249 0.94

2 13 0.00071 0.26 14.2 1.1 1 23 282 305 282 305 0.95

3 13 6.5e-05 0.024 17.5 0.4 1 23 311 333 311 333 0.99

4 13 4.3e-06 0.0016 21.2 0.9 2 20 339 357 338 359 0.96

5 13 1.2e-06 0.00043 22.9 2.6 1 23 370 392 370 392 0.97

6 13 0.00033 0.12 15.3 0.6 2 23 403 424 402 424 0.97

7 13 2.5e-05 0.0092 18.8 0.4 1 23 430 452 430 452 0.96

8 13 1.5e-06 0.00053 22.6 1.1 1 23 458 480 458 480 0.99

9 13 3e-06 0.0011 21.7 3.0 1 23 486 508 486 508 0.96

10 13 6.8e-05 0.025 17.4 3.6 1 23 514 537 514 537 0.97

11 13 1e-05 0.0037 20.0 0.3 2 23 544 565 543 565 0.96

12 13 2.4e-06 0.00088 22.0 0.2 1 23 571 593 571 593 0.98

13 13 4.3e-05 0.015 18.0 3.5 2 23 600 622 599 622 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	6.4e-06	0.0023	20.6	0.1	2	23	227	249	226	249	0.94
2	13	0.00071	0.26	14.2	1.1	1	23	282	305	282	305	0.95
3	13	6.5e-05	0.024	17.5	0.4	1	23	311	333	311	333	0.99
4	13	4.3e-06	0.0016	21.2	0.9	2	20	339	357	338	359	0.96
5	13	1.2e-06	0.00043	22.9	2.6	1	23	370	392	370	392	0.97
6	13	0.00033	0.12	15.3	0.6	2	23	403	424	402	424	0.97
7	13	2.5e-05	0.0092	18.8	0.4	1	23	430	452	430	452	0.96
8	13	1.5e-06	0.00053	22.6	1.1	1	23	458	480	458	480	0.99
9	13	3e-06	0.0011	21.7	3.0	1	23	486	508	486	508	0.96
10	13	6.8e-05	0.025	17.4	3.6	1	23	514	537	514	537	0.97
11	13	1e-05	0.0037	20.0	0.3	2	23	544	565	543	565	0.96
12	13	2.4e-06	0.00088	22.0	0.2	1	23	571	593	571	593	0.98
13	13	4.3e-05	0.015	18.0	3.5	2	23	600	622	599	622	0.94

Sequence Information

Coding Sequence: ATGGAGGAACCCCCATTAAAAGGTGCTCTGGTAAAAACAGAACTTCCAGATGTAAAACCAGAAATTATGGAAACAGCAGAGGTACCAAATAGAAACTTTATTGAGATAGAAAGTACAAATGAAGATAATGGTGAAGTACATACTGTTGTTCTTCAGAATATAGACATACAAGAAAATGGTGATGATCAATTAGATATTATAGGCAAACTTATTTCCCAAAATAATTCAGATGGGAATCTTAGAATTGATACTTTAAAGGAAAATACtgttatacatacatatataatCAACAACACTGAGTATGAAGAGATAAACAGTGATACAATAATTTATGAAGAAGTCTGTGAAGATGAAAACTCTATAGAATATGTAATTGAGGAAGACATAGGTTATGAAGAAACTGTAAGTTCAGTACCAGATGAATACAGTAATGTAGATGAATATGAATTCCATCTTGAAGAGGAAGATGTTGATGATCCAGAAGAAGATGATCTTACAGTCCAAGAAGTAGAGGAACAGGAAAGTATGAATAGAACTGAAGATATGATACAGATTGAAAATGTATTAGGAATGAAAGAAAGTGAAACAGAATCAGTAAGGAGAAGAGAATTGACAAATGCATCAAATGATAATGTTAATGAAAAAACTAACCTATCACATATGAAACAAGAGCAAATTGAGTGTGATATATGTCAGAAAGTATTTAGAACTGCTGCTGCTCTAAAAAGACATACCACTGTGAATCATGATAAACGAGATGAATTGCAAGGAGATGATCCTTTAACACTAGAATTGTGTCCTTGTTGTGGAGAACCATCAGATTCTGGCCAtgtgatcgGAGATTACAAATGCGAAGAGTGCGATAAGCTTTTTGTCCAATTAAACTTCCTACATCGTCATGCCAGTATAGAACATCCTAAGGATAATACATATAAATGTTCAGAATGCTTGAGGAAATTAAATTCCAAGGAAGAACTGATAGATCATATGCGAATACATTCCGTCAAAAGTGTGAAATGTTTGGAATGCAATAAGGAATTTACAAGAAAATATCATTTAGAAAGACATATGGGTCAAACAGGATGCATGGGGCAgccaaaaaaagtttttgattgtaggGTgtgtcaaaaatgttttacaagaAAAGATAATCTGGCAGAGCATTTAAGAATTCATGCTGGACAagtgaaaaagaagaaaaaattaactTGTACTTATTGCCAAAAGGAATTCCAAGGACTTACTTTGTTAAATATTCACGTTCGCACTCACACAGgtGAAAAACCGTATCTTTGCGACTTATGCCCAAAACGGTTTCCATCGAGTGGGGCATGGAAGAAACATAGAAGAATGCATACGGGAGAAAAGCCTTATAGGTGTAGTCAATGCGATAGAACTTTTGCCGCCAAAGAAACCCTTAACCGCCACGTACGTACCCACTCCGGAGACAAACCCCACCAGTGTAAATTCTGTGGTAAAGCCTTTATCCAACCGTCACAGCTTCGTGCGCATATTTTCCATCACACCGGAGAAAACGCTTACACCTGTCAGCATTGTGGAAGGGCGTTTAACCGAAAACTTCGTCTCACTACGCACATAAAATACATGCATGAAGGAGCGGAACCACTACCGTGTCCCAAATGTGAGAAAACCTTCTTCAGAAAAGAAGATGTGGCTAGACATATGCTATCCCATAGTGGAGAAAAGCCGTTTGTATGCGAAGTATGTCAAAAAGGGTTTGCAGTGAAATCTTCTTTGAAGATGCACATGAACATCCATAGAAAAGAACCTCCGTGTAGTTGTGAGACTTGTGGTAGGGCCTTTATACGGCGCGATTGTCTTATGAGGCACATCAGGGCCAGACATAGAGATGTACTGGAAGATATTTTAGCAAACGCTGAAAAGAAAAGACTACAACAACAATTACTAACAGCCGTTAGCGAATCTACGAACGAAAACCTAACAGAAAACATCATTTGGAACGAGTTGACTTTAACTGAATCTATTAAAGAACTTTTGACTCTTCTAGTAGACGAAGAATGTCTTGCGGAGTTCGGTTATCCTGAAGCACCGGTGGACAGAGTATTAGATTCTGTTATCAAACGTTGCGGGCACAATCCTGCATCCGAAGAAGACTTTGATTACATAGGAAGAATTAGAGAAAACGCAAAGCTTCTTTTTACGGTTGTTATTGATGATGAAGCTGTTAAGGCGTTATTGAACAATCAAACGGTTGACGAAGTTATACTGCACGTCTTAAAATTGGCAAAAAAAGAGAATaacaactaa
Protein Sequence: MEEPPLKGALVKTELPDVKPEIMETAEVPNRNFIEIESTNEDNGEVHTVVLQNIDIQENGDDQLDIIGKLISQNNSDGNLRIDTLKENTVIHTYIINNTEYEEINSDTIIYEEVCEDENSIEYVIEEDIGYEETVSSVPDEYSNVDEYEFHLEEEDVDDPEEDDLTVQEVEEQESMNRTEDMIQIENVLGMKESETESVRRRELTNASNDNVNEKTNLSHMKQEQIECDICQKVFRTAAALKRHTTVNHDKRDELQGDDPLTLELCPCCGEPSDSGHVIGDYKCEECDKLFVQLNFLHRHASIEHPKDNTYKCSECLRKLNSKEELIDHMRIHSVKSVKCLECNKEFTRKYHLERHMGQTGCMGQPKKVFDCRVCQKCFTRKDNLAEHLRIHAGQVKKKKKLTCTYCQKEFQGLTLLNIHVRTHTGEKPYLCDLCPKRFPSSGAWKKHRRMHTGEKPYRCSQCDRTFAAKETLNRHVRTHSGDKPHQCKFCGKAFIQPSQLRAHIFHHTGENAYTCQHCGRAFNRKLRLTTHIKYMHEGAEPLPCPKCEKTFFRKEDVARHMLSHSGEKPFVCEVCQKGFAVKSSLKMHMNIHRKEPPCSCETCGRAFIRRDCLMRHIRARHRDVLEDILANAEKKRLQQQLLTAVSESTNENLTENIIWNELTLTESIKELLTLLVDEECLAEFGYPEAPVDRVLDSVIKRCGHNPASEEDFDYIGRIRENAKLLFTVVIDDEAVKALLNNQTVDEVILHVLKLAKKENNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00911293;
90% Identity: -
80% Identity: -