Basic Information

Insect: Diorhabda carinata
Gene Symbol: su(Hw)
Assembly: GCA_029229535.1
Location: CM055252.1:29727383-29734573[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.6e-05 0.0014 19.4 1.3 1 23 223 246 223 246 0.96

2 13 0.0007 0.064 14.2 1.2 1 23 279 302 279 302 0.95

3 13 6.3e-07 5.7e-05 23.8 0.6 1 23 308 330 308 330 0.99

4 13 9.7e-06 0.00089 20.1 0.8 2 20 336 354 335 356 0.96

5 13 1.2e-06 0.00011 22.9 2.6 1 23 367 389 367 389 0.97

6 13 0.00011 0.01 16.7 0.4 2 23 400 421 399 421 0.97

7 13 5.6e-06 0.00051 20.8 0.2 1 23 427 449 427 449 0.98

8 13 5.7e-07 5.2e-05 24.0 1.4 1 23 455 477 455 477 0.99

9 13 3e-06 0.00027 21.7 3.0 1 23 483 505 483 505 0.96

10 13 2.6e-05 0.0023 18.8 2.1 1 23 511 534 511 534 0.97

11 13 1e-05 0.00093 20.0 0.3 2 23 541 562 540 562 0.96

12 13 1.3e-06 0.00012 22.8 0.2 1 23 568 590 568 590 0.98

13 13 4.3e-05 0.0039 18.0 3.5 2 23 597 619 596 619 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.6e-05	0.0014	19.4	1.3	1	23	223	246	223	246	0.96
2	13	0.0007	0.064	14.2	1.2	1	23	279	302	279	302	0.95
3	13	6.3e-07	5.7e-05	23.8	0.6	1	23	308	330	308	330	0.99
4	13	9.7e-06	0.00089	20.1	0.8	2	20	336	354	335	356	0.96
5	13	1.2e-06	0.00011	22.9	2.6	1	23	367	389	367	389	0.97
6	13	0.00011	0.01	16.7	0.4	2	23	400	421	399	421	0.97
7	13	5.6e-06	0.00051	20.8	0.2	1	23	427	449	427	449	0.98
8	13	5.7e-07	5.2e-05	24.0	1.4	1	23	455	477	455	477	0.99
9	13	3e-06	0.00027	21.7	3.0	1	23	483	505	483	505	0.96
10	13	2.6e-05	0.0023	18.8	2.1	1	23	511	534	511	534	0.97
11	13	1e-05	0.00093	20.0	0.3	2	23	541	562	540	562	0.96
12	13	1.3e-06	0.00012	22.8	0.2	1	23	568	590	568	590	0.98
13	13	4.3e-05	0.0039	18.0	3.5	2	23	597	619	596	619	0.94

Sequence Information

Coding Sequence: ATGGAGGAACCTCCAGGTGGTATCGTCAAAACGGAAATTCCGGACGTAAAACCGGAAATAATAGAAACAGGGGTCGAAGTGCTGGAaccaaatacaaattttatagaaatagaaagaaCAGATGAAGAAAATGGTGAAGTGCATACTGtagttttacaaaatatagaTATACAAGAAAATGGTAATGATCAATTAGCTATTATTGGTAAACTTATCTCCCAAAACAATTCAGATGGTAATCTCCGAATTGATACTATGAAGGAAAACAATGTTATACATACTTATATAATCAAtAATACAGAGTACGAAGAGATAGACGGAGACGCAATAATTTATGAAGAAGTCTGCGAAGATGAAAATTCCATAGAATACGTAATCGAGGAAGATATAGGTTATGAAGAAACTGTAGATTCGACGTCACAAGACGATTACAACAGCGCAGAAGCAACAGATGAATATGAATTCCGCGACGAAGAAGAAGCGATAGACGATCCCGAATCGGTAGATGATGAAGTACTTACAACCGATGaagaaaatcgaagaaaaactgaaaataacgAAAGTGCGAAAGAAAATTCACTTAAGAGAAAGCGGTTATTGGAAAACGGTGAAAGTTCTAATAATGGTGGACGAACGGACGCTGTACAGGATTTCAAAGACGAGCAATTTGAGTGCGATTTGTGTCACAAGCTTTTCCGTACTTCAGCAGCTCTGAAGAGACACATTACGGTGAATCACGAAAAACGCGAAGAAACTCAAGGAGACGATCCGTTGTCGTTAGAATTGTGTCCTTGTTGTGGAGAACCATCAGATTCCGGTCACGTGataGGTGATTTCAAATGCGAAGATTGCGATAAACTATTCGTCCAATTGAACTTCCTCCACCGCCACGCTAGTATAGAACATCCGAAGAGCGACGTTTATCAATGTTCGGAATGCTCAAAACAATTCAACACCAAAGACGGTTTGGTCGATCACATGCGAGTCCATTCGGTGAAAACTGTCAAGTGCTTGGAATGCAACAGGGAATTTACGAGAAAATACCATTTGGAAAGACACATGGGACAGACCGGATGCATGGGACAACCGAGGAAAGTATTCGATTGTAGGGTGTGTCAAAAATGTTTCACGAGAAAAGATAACCTCGCCGAACATTTGAGAATCCACGCCGGACAagcgaaaaagaagaagaaattaactTGTACTTACTGCGATAAAGAATTCCAAGGACTTACGTTGTTGAATATACACGTGCGCACTCATACAGGCGAAAAACCTTATCCGTGCGATTTGTGCCCGAAACGGTTTCCATCTAGCGGAGCTTGGAAGAAACATAGAAGAATGCATACCGGGGAAAAACCGTATCGGTGTAATCAGTGCGACAGGACGTTTGCCGCCAAAGAGACCCTCAATCGTCATCTGCGTACCCACACCGGGGAAAAACCGCATCAGTGTAAATTCTGCGGCAAAGCTTTCATTCAACCGTCTCAGCTTCGAGCTCACATTTTCCACCATACAGGTGAAAACGCGTACACTTGCCAGTATTGCGGAAGGGCTTTCAATAGAAAACTTCGTCTAACAACTCACATTAAATACATGCACGAAGGGGCCGAACCGCTGCCTTGTCCCAAATgcgaaaaaacgtttttcagaAAGGAAGATGTCGCTAGACACATGTTGTCACACAGCGGGGAAAAACcGTTCGTTTGCGAAATATGTCAAAAAGGATTCGCGGTGAAATCTTCTTTGAAAATGCACATGAATATCCACAGGAAGGAACCGCCTTGCAGCTGTGAGACTTGCGGTAGGGCGTTCATAAGACGCGACTGTCTCATGAGACACATCAGAGCTAGACACCGAGATGTTTTGGAAGACATTTTAGCCAACGCCGAAAAGAAGAGACTCCAACAACAATTATTAACGGCAGTTAGCGAATCGGCTAACGAAAGTTTAACAGAAAATATAATCTGGAACGAATTGACTCTAACGGAATCAATCAAGGAACTTTTGACGCTTCTCGTTGATGAAGAATGTCTTACGGAATTCGGTTATCCCGACGCCCCGGTGGACAGAGTGTTGGATTCGGTTATAAAACGTTGCGGACACAATCCTGCTTCGGAAGAAGATTTCGATTATATAGGGAGGATCAGGGAAAATGCAAAGTTATTGTTCACCGTCGTTATAGATGACGAAGCCGTCAAAGCGTTGTTGAATAATCAAACTGTCGACGAGGTTATATTGCACGTCTTGAGATTGGccagaaaagaaaataaaacttga
Protein Sequence: MEEPPGGIVKTEIPDVKPEIIETGVEVLEPNTNFIEIERTDEENGEVHTVVLQNIDIQENGNDQLAIIGKLISQNNSDGNLRIDTMKENNVIHTYIINNTEYEEIDGDAIIYEEVCEDENSIEYVIEEDIGYEETVDSTSQDDYNSAEATDEYEFRDEEEAIDDPESVDDEVLTTDEENRRKTENNESAKENSLKRKRLLENGESSNNGGRTDAVQDFKDEQFECDLCHKLFRTSAALKRHITVNHEKREETQGDDPLSLELCPCCGEPSDSGHVIGDFKCEDCDKLFVQLNFLHRHASIEHPKSDVYQCSECSKQFNTKDGLVDHMRVHSVKTVKCLECNREFTRKYHLERHMGQTGCMGQPRKVFDCRVCQKCFTRKDNLAEHLRIHAGQAKKKKKLTCTYCDKEFQGLTLLNIHVRTHTGEKPYPCDLCPKRFPSSGAWKKHRRMHTGEKPYRCNQCDRTFAAKETLNRHLRTHTGEKPHQCKFCGKAFIQPSQLRAHIFHHTGENAYTCQYCGRAFNRKLRLTTHIKYMHEGAEPLPCPKCEKTFFRKEDVARHMLSHSGEKPFVCEICQKGFAVKSSLKMHMNIHRKEPPCSCETCGRAFIRRDCLMRHIRARHRDVLEDILANAEKKRLQQQLLTAVSESANESLTENIIWNELTLTESIKELLTLLVDEECLTEFGYPDAPVDRVLDSVIKRCGHNPASEEDFDYIGRIRENAKLLFTVVIDDEAVKALLNNQTVDEVILHVLRLARKENKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00911293;
90% Identity: -
80% Identity: -