Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.55 5.1e+02 1.9 0.5 16 26 17 27 11 30 0.83

2 10 0.013 12 7.1 1.4 18 31 93 106 85 115 0.80

3 10 0.00077 0.72 11.1 2.9 12 41 118 144 107 145 0.82

4 10 0.071 66 4.8 0.3 18 39 152 170 149 175 0.86

5 10 0.019 17 6.7 9.0 5 40 168 199 166 203 0.84

6 10 0.14 1.3e+02 3.9 0.4 13 29 203 219 199 229 0.79

7 10 1.8 1.7e+03 0.3 7.9 15 39 233 254 224 277 0.80

8 10 4.4 4.1e+03 -1.0 0.5 17 29 263 275 256 283 0.75

9 10 2.6e-05 0.024 15.8 1.1 6 40 281 311 276 314 0.80

10 10 0.002 1.9 9.7 3.6 17 43 319 342 312 343 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.55	5.1e+02	1.9	0.5	16	26	17	27	11	30	0.83
2	10	0.013	12	7.1	1.4	18	31	93	106	85	115	0.80
3	10	0.00077	0.72	11.1	2.9	12	41	118	144	107	145	0.82
4	10	0.071	66	4.8	0.3	18	39	152	170	149	175	0.86
5	10	0.019	17	6.7	9.0	5	40	168	199	166	203	0.84
6	10	0.14	1.3e+02	3.9	0.4	13	29	203	219	199	229	0.79
7	10	1.8	1.7e+03	0.3	7.9	15	39	233	254	224	277	0.80
8	10	4.4	4.1e+03	-1.0	0.5	17	29	263	275	256	283	0.75
9	10	2.6e-05	0.024	15.8	1.1	6	40	281	311	276	314	0.80
10	10	0.002	1.9	9.7	3.6	17	43	319	342	312	343	0.87

Coding Sequence: ATGTATTTGTACATAATAGGCAGCCAGGCAAAAGACGGCTGTTTACCTAAAAACGTATGTATTTATTGTATTTCGAAGCTTAAAGACCTCTCTGCCTTTATTGATGAATGTAAAAAGAAAGAACTCTTGTTAACGAAAATATATGAAGAACAGATTAATCAAAAAAGTAATTCAGATGGAGATTTATCGGATGATGAGTTTTGGGATAAACCGAAAATCTCACAAAATGATAAGTATGAAAAATGTATGGTAGAGAAAAAAGAACAGGAACCTTATGAATGTAAAttgtgcaataaaatatttcatagaaAATCATCCTTTGCTAATCATACTCGCATGCATAAATATAAACGAGAACCAAAAAAGTTCCTGTGTAATTACTGTGgtaaaaattttatgaaaagttCGCATTTGGAAAGACATATTCGAAGTCACACTGGAATTAAGCCATTTGAATGTGAAAACTGTGGGAAAAGTTTTGTACAGAGTAATGATCTCAAAAGACATCTATTGACACATAccagagaaaaaatatttcagTGCAAGCATTGTAATAAAGGATTCCACCAGAAATCATGTCTTGTTAATCACATCATGAcccacagtaatgaaaagaaattCCCTTGtgttttttgtgataaaaagtTTACTATGAAAACGTATCTTAACGTACATATGAGAATCCACACAGGTCAGAAATTGTTCCATtgCACTCATTGTGACAAGCAATTCCACCAAAAGAGCGGTCTTAACAACCATATCTTAACACATACTGGAgaaaagccattcaaatgtaCCCAGTGTGATAAAACTTTTATACAATCAAATCATTTAAAGGAACACCAGAGAATACATAGCGGAGAAAAACCCTTCGTTTGTTCTTACTGTGGCAAAAACTTCACTTATGGCAGCACATTGAAAGTTCATTTACGACAGCATACAGGGGAAACTCCACATATTTGCTCATTCTGTGGTAAAGGTTATAGAGATTCAAGTAATTTACGAAGACACACCAATAGGCACCATGTAAATGGTTCGATTGAAAATCCACCCAATCATGAAAATATAGACATAAAACAAGATTGA
Protein Sequence: MYLYIIGSQAKDGCLPKNVCIYCISKLKDLSAFIDECKKKELLLTKIYEEQINQKSNSDGDLSDDEFWDKPKISQNDKYEKCMVEKKEQEPYECKLCNKIFHRKSSFANHTRMHKYKREPKKFLCNYCGKNFMKSSHLERHIRSHTGIKPFECENCGKSFVQSNDLKRHLLTHTREKIFQCKHCNKGFHQKSCLVNHIMTHSNEKKFPCVFCDKKFTMKTYLNVHMRIHTGQKLFHCTHCDKQFHQKSGLNNHILTHTGEKPFKCTQCDKTFIQSNHLKEHQRIHSGEKPFVCSYCGKNFTYGSTLKVHLRQHTGETPHICSFCGKGYRDSSNLRRHTNRHHVNGSIENPPNHENIDIKQD

Sequence clustering based on sequence similarity using MMseqs2