Lcap035448.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- tfip11
- Assembly
- GCA_949126875.1
- Location
- OX421406.1:5354052-5359122[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-96 3.6e-92 310.5 14.0 1 275 398 670 398 670 0.98 2 2 0.2 5.7e+03 -1.7 0.1 156 189 681 713 675 720 0.65
Sequence Information
- Coding Sequence
- ATGTCTGACGATGAAATGGAGAAATTTGAAATTACAGATTATGACCTGGAGAATGAATTTAACATAAATAGAACCAGAAAAAAACAGAGTAAACACCACCAAATTTACGGTATATGGGCAGATGATAGTGACGAAGATGATAAAAAGtcatacaattataaaaaaccACCCAAAAATTATTCAGCACCTATTGGATTTGTAGCAGGTGGTATCCATCAAGTTGGTAAGAAAAAAGATGCTGagaaaaaagcaatcaaaacGGAAGATGATTCTGAAGAACATTCTCTTAAAGCACCTGATAGTTCTGATGAGTCTGAGAATGAAACGCCAGCTAGAGCAGGTTTTGGTATGAGCCACAATAAAAAGCCAATACAATCCACTGTAACTGAAATTAATGCTGAAATTGCTGGAATGAGAACAAAAAGTACAGTGAATCAATCACTAATTAATAAAGGTGTAGGTAACTGGGAAAAGCACACAAAAGGAATTGGAGCCAAATTGTTGCTTCAGATGGGTTTCCAGCCTGGTAAAGGTTTAGGAAAAGATTTGCAGGGTATTTCTGCACCTGTAGAGGCACACTTAAGAAAGGGAAGAGGAGCTATTGGTGCATATGGACCAGAAAAATCTGCTAGTATACCCAAACTCAAGGACATGACTGTAAAGCTGGAGCTAGAAAATGAAATTGATGAAACAAAAGGTGAATCAAAGTGGAAGAAAAATGAATCTTTAAACAAGAAAAGCAGATATTATTACAGAAGTGTTGACGATGTTATTGAAAAAGGTAAACGACCAGGAGCTTATAGAAATTTGGGAAATGCAagcgAACTCAGTAAGGTTAAGGTAATAGATATGACAGGCCCCCAACAGAGAGTTCTTAGTGGATATCATGCTCTAAGTGGACTAAAAGCACCTCCAGGAGTTGAACACTTTGAAGATGTAGtccataaaaaatgttcaaattttgCATTACCTGAAATTCAGCATAATTTGGATTTGCTAGTTGATATATGTGAACAAgATATTATACGAATAGACAGAAACACAAGATTTAACGAAGATAAGATCATAGCTCTGGAGCAAGAGGAGAAATCTCTGAAAGAGGTGTTGAGAAGCGAAGATATAACGTTGAATAACTTGAAAGATGTGATGGACGTAGTAGAAAAACTAATGGATACCTCTCAGACTTATTCTTTAGGACAAACTGCCAGTATTTTCAAACAATTACAGGAGGATCACCATGACGAGTATGTTATGTACGAACTGGGCGAGCTAGCTCCAGGATTAATAGGTCCCTTGTTAACATCAGCTCTGGCTAATTGGAATCCTTTAACTCAACCACATCAGTATGTTGACGTTTACGTCCAATGGAAGGGTATATTGGAGAAGCCATCTCAACAACGTGGGAATCTAGAAGGTAATAAAATGGGAATACAGCCATATGATAGTCTCATTTGGCATACTTGGATGCCTGTTATGAGAACTTGCGTTAGttCATGGAATCCTAGAGATTGCGATCCTTTGATAACCGTTATTGAAACATGGAAACCGTTATTACCGCAGTGGATCACAGAAAACGTTTTCAGCCAATTAATAATGCCCCGAATACTTAAAGAAGTCAACGATTGGAACCCAGTCACCGATACTACACCCATACACGTTTGGATTCACCCTTGGATACCTCTATTAGACGAAAAACTTCAAACTTCAGTTTATCCAGTGATTCAAGAAAAACTTGGCAACGCTTTAACGAACTGGCATCCATCGGATAGATCGGCGAAGTTGATGCTTCAACCGTGGCAGAGGGCGCTATCGCAAGGATCTTTCGTCGCTTTTCTTCTCAAGCACATCGTACCCAAGTTGCAGATATGTATGCAGTCTTTAGCAATTAATCCCCATCAACAGCACTTAGATCCTTGGAATTGGGTAATGGATTGGAGTGATATGATTTCCGTGGGTAATATGACGTTGATATTGGACAAATTCTTCTTTCCAAGATGGTTGCAAACGTTGGCATTGTGGCTTAATCATAATCCGAATTATACTCAAGTCACTGAATGGTATTCCGGATGGAAGAGGATGCTTTCAGATGAATTAATTAATCAACCCAATATAAAAGaacaCTTTCATAATGCGTTAGAAATGATGAATAGGGCAGTGAACGTAGAACAACCAGGAGCTAAGGAATCGattttgtatttgaaaaatatggaaGAAAACGGAATTACTCCACCTCCTTCAGCTCAACCAAGAGTTGAGacCTTCGCGGAAGCCGTTAAAACCGCGTCGAAGATTCCTCAAGGATTCAAGGACCTTGTGATGAAAAAATGCGAAGAACGAGGAATGCTGTTCGTACCCGTTCCAAATAAGTATCATGAAGCGAAGCAAGTGTACAAAATTGGATCGAACGGTATGCAATGTTATATCGACAGAAATGTCatattttattctcaaaattACTCGACTTGGATTCCTACTTCgttaaataaattgttagaTTCTGCATAG
- Protein Sequence
- MSDDEMEKFEITDYDLENEFNINRTRKKQSKHHQIYGIWADDSDEDDKKSYNYKKPPKNYSAPIGFVAGGIHQVGKKKDAEKKAIKTEDDSEEHSLKAPDSSDESENETPARAGFGMSHNKKPIQSTVTEINAEIAGMRTKSTVNQSLINKGVGNWEKHTKGIGAKLLLQMGFQPGKGLGKDLQGISAPVEAHLRKGRGAIGAYGPEKSASIPKLKDMTVKLELENEIDETKGESKWKKNESLNKKSRYYYRSVDDVIEKGKRPGAYRNLGNASELSKVKVIDMTGPQQRVLSGYHALSGLKAPPGVEHFEDVVHKKCSNFALPEIQHNLDLLVDICEQDIIRIDRNTRFNEDKIIALEQEEKSLKEVLRSEDITLNNLKDVMDVVEKLMDTSQTYSLGQTASIFKQLQEDHHDEYVMYELGELAPGLIGPLLTSALANWNPLTQPHQYVDVYVQWKGILEKPSQQRGNLEGNKMGIQPYDSLIWHTWMPVMRTCVSSWNPRDCDPLITVIETWKPLLPQWITENVFSQLIMPRILKEVNDWNPVTDTTPIHVWIHPWIPLLDEKLQTSVYPVIQEKLGNALTNWHPSDRSAKLMLQPWQRALSQGSFVAFLLKHIVPKLQICMQSLAINPHQQHLDPWNWVMDWSDMISVGNMTLILDKFFFPRWLQTLALWLNHNPNYTQVTEWYSGWKRMLSDELINQPNIKEHFHNALEMMNRAVNVEQPGAKESILYLKNMEENGITPPPSAQPRVETFAEAVKTASKIPQGFKDLVMKKCEERGMLFVPVPNKYHEAKQVYKIGSNGMQCYIDRNVIFYSQNYSTWIPTSLNKLLDSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00026045;
- 90% Identity
- iTF_00735560;
- 80% Identity
- -