Lcap035572.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- ARID5B
- Assembly
- GCA_949126875.1
- Location
- OX421406.1:7468765-7502175[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6 4.4e+04 -3.4 0.0 34 48 267 281 265 286 0.77 2 3 7.1e-25 5.2e-21 76.5 0.0 2 89 372 457 371 457 0.94 3 3 5.8 4.2e+04 -3.4 0.0 55 83 890 920 867 921 0.68
Sequence Information
- Coding Sequence
- ATGGATTCACCGGCTAATACCGAATATAAAAGAGTGGATGGGGAAGTCGATTATTTAATAACTCAGGCGTTGAGTGGGCATGGGTGCttcaaaaaatatctatttggtcgcaTGAGAGCAGACTCCGAAGCCTGCCCGTACTGTGGAGAAGAAGATAATGTGCAACACACCTTGTTTGCATGTGTACAATGGAAGGAATTCGTCGGTGGACCGTGTGGCCAACATGGACCTTATACGTTCTACAAAGCGTTCAAATATAATAAAGACGGAATTTGTCGAATAGTGACTTTGAGTGAATTTTTCTTCGTAAAAATGTGGAGAGACAGTGACTTATTGTGTATCGGCGAACTACAATTATTGTGGATTGATAAACATAGTGAACAAGTGTTGGCAAGTTTAAGATTATATTTCTTACCGGAAAATACGCCGGAAGGTCGTTTGGATCATGGAGAGGATGAAGTTCTTGCGATAACGGAAAAAGTAGTGATAAGAGTGGAAGATTTAATAACGTTGATAACCGAGGAAGCGGAATGGACTTGGGGTCGATTAGCCAAGTCCGAACAAGACATGAAGCAATCAGATGAAAATCCTAACGACGACGACGTGCCTCCTAGAAAACCCGCCGGATTAAGTTTtacaataaatgaaaatttgttggACTATACAGATGTTGAAACTGAACGAAAACACTTGGataatacaaaaacactGAAAGATCCTCACGTAGTTATTCtcagttttccaaaatactGCCGATACAGGGCCATGATGAAACGACTCGACGGCGTCGAAGAcatctatttaaaatacaaaatagtaAACGCTTTGGGTGGATTCTACGTAATTCATCCGAATACCAGAGTACTCTTTTGCAGAGATACTTTCGATTATCCCGAATTAGAAGGTCACGAATTACTTTGCAACCATTTGGCTCCAAAACTTAAGGGCCGACCTAGAGGTAGACGAAAAAAACGGAGCGTTTCGCCGGGTTCAGAAAGCAACGAATCCGAATCTTCTGTTACTACCAGTACAAAGgcCGAAGCAAAGAACAATGTTCAAGAAGCTTCTGAAAGTGCTCCTCGACGTAGTACCCGATGCCacgaaaataatgaaaacaaagaATTCGTACGAAAACTTGGGGCTTTTATGAAATCAAATCGTACCCCCATCGGAAGAATTCCTTCATTGGGATACAAAGAACtgaatTTACACGAATTTTTCACCAGAGTACAAAAATTAGGCGGTTACAATTGCGTAACGACCAATCGCTTGTGGAAATCTATTTTCGATGAAATGAGTGGACACCAGAATAGTACAAGTGCAGCTACGATTATAAGAAGACATTACGAAAgaTTTTTATTACCGTACGAAAGACAGCAAAGAGGCGAAGACTACAAACCTCTACCAGGTTCGGAAAGAAGAAGATTAAAACATAAACGAGGAAGTGGCAGCTTAAGCGATGCCGAATCTAGTAGCGACAGTTCAATACCTTCGACGTCCAGAAAATTATCCATTTCGGAAAATTTAACAGATACAAAGgAAATTGTTAAGCCAGAAGGAAAACCGTCGTCTTTGAGAAGCGTTCGCGTGAAACCGGACCGACAAAAAGACAAACAATTACAGAGTGAAAAAGACAACGTcaacaacaataataacaatGAAAAATGGCAACCGTCGATAGAGCAATCGGAAGATGGAAACGACGTTAAAAAAGTAGAAAAATTGGTAATTAAAACGGAAAGTATGACAGTGAAAACGGAACTTTCCACTGTAATTACACAAACCCACCCCTTAAAAATAGAATACGACTCAGTAAAAACCGAAACCGAAGAAACAAAGGgtcaaataaaaacagaaaatacaaatatacccgTGACAATATCAGTGAAAATAGAAACCAACCTTAAAACCGAAACGAATCCAGTAAAATTAGAAGAATGTTCTTCggtaaaaatagaaaacagTCCAATTCCCATAAAAACCGAAGAAACCgaaaataatgatataaaaatagagatGGAAAAAACGGAAACAGCCGCAACACCCGTAGCTGTAAAAGTACCTGTAAGTGAAGTTATGTCACCAGTAGAAGGAAAAGAAAACATACCGCTAATAAAAACACCAGAAAAGAATCTGGAAATCATAGAAGTACCTTATAGACCGAAAGCTCCCGAAACCGCCAGCTTAGAAGCCGAAAGttacaaaaacaatttcataCACGAATTTAAAAAGAGAAAATTGGATATTTTAAAAGAAGGTGGATTGGAAGTAACGCCAGTAAGAACTTCGACGCAAAAAGACGGTCGACCTTCGGTTATACAAACCCCGCCAGTacaattaatttcaaaacctcCCAAATCGGAAACAATGCCGCCTCCAACCAGTGTTCCTTTAAAAAGAACTCACGTAACAGTTCCTCAAACTTTAAATATCAGCCAAGTACATTCTACGCCTACAAAGAAATCACCCGTTCCTAGTTATAGTTTTGTAAACGGTGTTTCACCTCCTAAAGTCGTCCAATCGAGGTCGATTTATACCTACTCGGAGAAAACTATATACGGGAATCCAAAAGACATTCTTAACCCTATCGTTCACGCACCAAAATTCGTCGATTCGGTATTAAGACAACCCGGCGGTGATCCGGTAGATTTATCGGTGAACAGTCCGCAAAAACCGATCGTAGAAATAATGAGGATACCACAAACGTCTACAAATTCGCCTTTTAATCGAGACAGTGTCACTAAAAACTTGTACAAGACGAATTCGATAATGGACGGTAGGCGATTAGGTCCGAATTTAGAAATAACTCTAGTCGGACCGAACAGCAAAAATAATTATCCTCGAACGCAACAAAAGATGTACAATAATTACCAAACAGGTGCGTCGACGTACGTCGGACCGCCGCAAAAACGAGTGTCGACAGATTGTTACACCCCGTCGAAAATTACTAAAAACgaagaaaatggaaaatataaacCCAAACAAAACATAGATTTCAAACACGAATCAGTGAAACCGGCGTCGAGTCGACAACCGCAGCagaatttaaaacaatattcgAATACTTTACCGGCTTTTCCGCCGTATTTAACGCAATTTTACGAACACACTGGTAAAAATATGCCGCCCTATCTGCCTTTCATAGATCCAACTATGTATTATACTGCAGCGATGCAAAATTTATATTCGACCAACAATTTAAACTCCGCGCCGATCTTACCGATGCCCACTCCCGAGCAGCTCAAATTGTACGCGGAATTAATGGCGCACGGTAGGATGCCTTATCCTTTTCAGATGCCGCAGGATACTAGCAAGCTGAAGAAGCAGTAA
- Protein Sequence
- MDSPANTEYKRVDGEVDYLITQALSGHGCFKKYLFGRMRADSEACPYCGEEDNVQHTLFACVQWKEFVGGPCGQHGPYTFYKAFKYNKDGICRIVTLSEFFFVKMWRDSDLLCIGELQLLWIDKHSEQVLASLRLYFLPENTPEGRLDHGEDEVLAITEKVVIRVEDLITLITEEAEWTWGRLAKSEQDMKQSDENPNDDDVPPRKPAGLSFTINENLLDYTDVETERKHLDNTKTLKDPHVVILSFPKYCRYRAMMKRLDGVEDIYLKYKIVNALGGFYVIHPNTRVLFCRDTFDYPELEGHELLCNHLAPKLKGRPRGRRKKRSVSPGSESNESESSVTTSTKAEAKNNVQEASESAPRRSTRCHENNENKEFVRKLGAFMKSNRTPIGRIPSLGYKELNLHEFFTRVQKLGGYNCVTTNRLWKSIFDEMSGHQNSTSAATIIRRHYERFLLPYERQQRGEDYKPLPGSERRRLKHKRGSGSLSDAESSSDSSIPSTSRKLSISENLTDTKEIVKPEGKPSSLRSVRVKPDRQKDKQLQSEKDNVNNNNNNEKWQPSIEQSEDGNDVKKVEKLVIKTESMTVKTELSTVITQTHPLKIEYDSVKTETEETKGQIKTENTNIPVTISVKIETNLKTETNPVKLEECSSVKIENSPIPIKTEETENNDIKIEMEKTETAATPVAVKVPVSEVMSPVEGKENIPLIKTPEKNLEIIEVPYRPKAPETASLEAESYKNNFIHEFKKRKLDILKEGGLEVTPVRTSTQKDGRPSVIQTPPVQLISKPPKSETMPPPTSVPLKRTHVTVPQTLNISQVHSTPTKKSPVPSYSFVNGVSPPKVVQSRSIYTYSEKTIYGNPKDILNPIVHAPKFVDSVLRQPGGDPVDLSVNSPQKPIVEIMRIPQTSTNSPFNRDSVTKNLYKTNSIMDGRRLGPNLEITLVGPNSKNNYPRTQQKMYNNYQTGASTYVGPPQKRVSTDCYTPSKITKNEENGKYKPKQNIDFKHESVKPASSRQPQQNLKQYSNTLPAFPPYLTQFYEHTGKNMPPYLPFIDPTMYYTAAMQNLYSTNNLNSAPILPMPTPEQLKLYAELMAHGRMPYPFQMPQDTSKLKKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00911606;
- 90% Identity
- iTF_00735264;
- 80% Identity
- -