Basic Information

Insect: Lobophora halterata
Gene Symbol: -
Assembly: GCA_932525835.1
Location: CAKOAV010000008.1:3716820-3736223[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 8.8e-05 0.0051 17.3 1.5 1 23 419 441 419 441 0.96

2 20 0.0022 0.13 12.9 2.9 1 20 447 466 447 469 0.94

3 20 0.00067 0.039 14.6 5.8 1 23 488 510 488 510 0.98

4 20 4.3e-05 0.0025 18.3 5.1 1 23 516 538 516 538 0.99

5 20 3.8e-05 0.0022 18.5 5.3 1 23 544 566 544 566 0.97

6 20 1.3e-07 7.8e-06 26.2 5.2 1 23 572 594 572 594 0.98

7 20 1e-06 6e-05 23.4 2.8 1 23 600 622 600 622 0.97

8 20 0.0001 0.0061 17.1 6.7 1 23 628 650 628 650 0.97

9 20 2e-05 0.0012 19.4 6.4 1 23 656 678 656 678 0.98

10 20 5e-07 2.9e-05 24.4 1.9 1 23 684 706 684 706 0.98

11 20 5.1e-05 0.003 18.1 7.9 1 23 712 734 712 734 0.98

12 20 0.00013 0.0078 16.8 6.8 1 23 740 762 740 762 0.97

13 20 2e-06 0.00012 22.5 5.2 1 23 768 790 768 790 0.98

14 20 7.1e-05 0.0042 17.6 5.8 1 23 796 818 796 818 0.96

15 20 1.1e-05 0.00065 20.2 5.2 1 23 824 846 824 846 0.98

16 20 2.4e-06 0.00014 22.3 3.8 2 23 853 874 852 874 0.98

17 20 1.7e-05 0.001 19.6 8.0 1 23 880 902 880 902 0.97

18 20 7.4e-06 0.00044 20.7 6.6 1 23 908 930 908 930 0.97

19 20 0.00034 0.02 15.5 0.3 1 23 937 959 937 959 0.97

20 20 0.031 1.8 9.3 6.0 1 23 969 991 969 991 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	8.8e-05	0.0051	17.3	1.5	1	23	419	441	419	441	0.96
2	20	0.0022	0.13	12.9	2.9	1	20	447	466	447	469	0.94
3	20	0.00067	0.039	14.6	5.8	1	23	488	510	488	510	0.98
4	20	4.3e-05	0.0025	18.3	5.1	1	23	516	538	516	538	0.99
5	20	3.8e-05	0.0022	18.5	5.3	1	23	544	566	544	566	0.97
6	20	1.3e-07	7.8e-06	26.2	5.2	1	23	572	594	572	594	0.98
7	20	1e-06	6e-05	23.4	2.8	1	23	600	622	600	622	0.97
8	20	0.0001	0.0061	17.1	6.7	1	23	628	650	628	650	0.97
9	20	2e-05	0.0012	19.4	6.4	1	23	656	678	656	678	0.98
10	20	5e-07	2.9e-05	24.4	1.9	1	23	684	706	684	706	0.98
11	20	5.1e-05	0.003	18.1	7.9	1	23	712	734	712	734	0.98
12	20	0.00013	0.0078	16.8	6.8	1	23	740	762	740	762	0.97
13	20	2e-06	0.00012	22.5	5.2	1	23	768	790	768	790	0.98
14	20	7.1e-05	0.0042	17.6	5.8	1	23	796	818	796	818	0.96
15	20	1.1e-05	0.00065	20.2	5.2	1	23	824	846	824	846	0.98
16	20	2.4e-06	0.00014	22.3	3.8	2	23	853	874	852	874	0.98
17	20	1.7e-05	0.001	19.6	8.0	1	23	880	902	880	902	0.97
18	20	7.4e-06	0.00044	20.7	6.6	1	23	908	930	908	930	0.97
19	20	0.00034	0.02	15.5	0.3	1	23	937	959	937	959	0.97
20	20	0.031	1.8	9.3	6.0	1	23	969	991	969	991	0.99

Sequence Information

Coding Sequence: ATGAATCCGGAACATCACAATATCAATACGGGCGGAGGCCAGCCTCCTGGGACTTCAGAGTCCCAGAATCAAAGAGTGCAGTCTCAGCAGCAGCAAGTGAGTCTGCCTGCGACCACGTCAGCCACTGACTTGCGAGTGAATTCGGCAGCTGTGAACGTTGCTTTGTCAAGTGTCGCAAAGTACTGGGTGTTTACAAATCTCTTCCCTGGCCCGATTCCTCAAGTATCTGTCTATGGGCTACCTACCGGGACAAGAATTGAGAATGGAAAAGCAGTGCAGGATCTTGGCCAAGCTCATGCAAGCATTCTCAATGGAGAGCCGGAGTTTATCCTTGGACATCATGGCGGACAGGCGGGAGTTACGGTGTCTGCATCTCAGCAGATACCCGTGTCACAGATCATTGCGACACAGTCGGGGCAAGCACATGAAGCATTGGTGGGCCACAGTCAACAGCAAGAGTTGGCGCAGCAAGCATCAAACGCACAGGTCCAAGTCTCCGCTACGCATCAGCAGGTACCCAATAACCGGGTCGAATTTGTACAACACCATAACATTGATATGGGTCACCATGCTCAACAGCAACACTTAATGCAACAACAGCTGATGAACTCGCGACCAGAACACACGAATCAACAGATTCAGCTGACGGTCAGCGAAGACGGTATTGTGACCGTTGTGGAGCCGGGCAGCAGCAAGATGGTGGAGAAAGAAGAAATGCATGAGACCATCAAACTACCTGCGGACCACACTACTTTGACTGTACACCAACTGCAGCAAATTGTTGGACAGCAAGTGTTGGATAGCGTGGTCCGCATCGAGCAAGCGACAGGCGAGCCGGCGAACATCCTCGTCACCCACAACCCAGACGGAACCACGTCCATAGAAGCCAGCGCCAGCGCCAGCGACCCGCTGGCGATCAACGTCAAAGATGAGAAGAACTCCAAAATGGACACTCAGTACGCTATACCCGCGGAAATCAAGGAGTTGAGCAATATCAAGGGCATCGATTTGAAGACTGTAGGAGCAATGAATATGGAAGGTGCAGTAGTCAAGATATCCACCGGCGCACCCGAGCACGATCTTCACGCGATGTACAAAGTGAACGTAGAAGATTTATCGCAGCTACTGGCCTACCACGAGGTCTTCGGGAAGATGGGCCCCGACGGACAACCTCAGGCTAAAgttAGCGAAGTGGAGATAGAAGTGCCTGCGTCTGGTTCGGCGATGTCTGAAGCGGAATCCTCCCCCGGCCACCACGCCTGTGATATTTGCGGGAAAATATTCCAGTTCCGCTATCAACTTATAGTTCATAGACGTTATCACGGCGAGAGCAAGCCATTCACGTGCCAAGTGTGCGGCACATCATTCGCAAATCACGTCGAATTGTCCCGCCACGGAAAATGCCACCTTGCCGGCGACCCCGCCGAGAGACACGCCAAGAGAGTAGCGCAGGACAAACCCTACGCATGCACCACTTGCCATAAAACCTTCTTGCGTAAGGAGCATCTGAATAATCACGTGCGCAGCCACACGGGGGAAACGCCGTACAGATGCGAGTTCTGTTCGAAAACGTTCACGCGTAAGGAACATATGGTGAATCACGTACGAAAGCACACGGGCGAGACGCCGCACCGCTGCGACATCTGCAAGAAGAGCTTCACTAGGAAGGAGCACTTCATGAACCATGTCATGTGGCATACAGGTGAAACGCCGCACCAATGTGCTATTTGTGGGAAGAAATTTACTAGGAAGGAGCATTTGACGAATCATATGAGGTCGCACAACCACGATACTCCATTCCGATGCGATCTGTGCGGCAAATCCTTCACGAGGAAAGAACACTACACCAATCACATATTATGGCACACTGGTGAAACTCCACATCGTTGCGATTTCTGTTCGAAAACATTCACACGCAAAGAGCATCTTCTAAACCACGTCAGGCAACACACGGGCGAATCTCCCCACCGCTGCAACTATTGCTCGAAGTCATTCACACGGCGCGAGCATCTAGTGAACCACGTCAGACAGCACACAGGAGAGACTCCTTTCCAATGCGGATACTGTCCTAAGGCATTTACGAGGAAAGACCATCTCGTGAATCACGTTCGGCAACACACGGGTGAATCCCCGCACAAGTGTTCATTCTGCACGAAATCCTTCACTCGCAAGGAACATCTGACGAATCACGTGCGCCAACACACGGGGGAGTCGCCTCATCGCTGCACTTTCTGCGCGAAATCGTTCACGAGGAAAGAGCACCTCACTAATCATGTTAGACAGCATACGGGCGAAACGCCACACAAGTGCACGTATTGCCCGCGCGCGTTCTCGCGCAAGGAACACTTGAACAGCCACATTCGCCAGCACACGGGCGTCACGCCGCACGCCTGCTCCTTCTGCACCAAGAGCTTCACGAGGAAGGAGCATCTCGTGAACCACGTGCGGAAACACACCGGCGAAACTCCGTTCAAGTGCACGTTCTGTTCGAAGTCGTTTTCGCGCAAGGAGCATCTCACGAATCACGTGAATCTGCATACTGGCGAGACGCCCAACAAATGCCCCTTCTGCACTAAAACATTCTCTAGAAAGGAGCATCTTACCAACCATGTCAGAATACATACAGGAGAATCTCCGCATCGGTGTGAATTCTGTCAGAAAACGTTCACGCGTAAGGAGCATCTCACGAATCACATGAAACAGCACACAGGAGACGCAGCGCACACTTGCAAGGTCTGCCAGAAACCATTTACCAGGAAGGAACATCTACAGACTCACATGAAATATCACAGTTGCGGCGAGCGTCCGTACAGTTGCGGCGAATGTGGTAAATCCTTCCCGCTGAAGGGTAACCTCATGTTCCACGAGCGCTCGCACAACAAGGCGGGCTCCGGTCCGAGGCCCTTCCGCTGTGATATCTGCTCCAAGGACTTTATGTGCAAAGGGCACTTGCTGACGCATCGGCGAACGCACACGGATGCGGCCGAGGAAAGCGCGACGGAACCACGGGTGGAGACAGAGGAGTGCCTCACTGTCACAACAGACTGCACAAACAAGTGCATCAAGGTGGAGCTCGATGTCGCTGAACGGAAGATCGACCCGAGATCAACTGAAAACGAGCAAACCGAAGTTGTAGTGTCACAGCCCACAATCAATATTTCTCCAAACCACATTGTGACAACTCAAACTCAAAACTCTGTGATGCAGATAAGTAGCCAGCAGGTGCGTGTGCCGACTACGAGTCCTGCCGGCGTGACCGGTACATTCACACACACCGTCTCTACGCAGCACCACGCGGGAACCACCATCTCTCACCATCCTGTCACCGTTAACTACTAG
Protein Sequence: MNPEHHNINTGGGQPPGTSESQNQRVQSQQQQVSLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKAVQDLGQAHASILNGEPEFILGHHGGQAGVTVSASQQIPVSQIIATQSGQAHEALVGHSQQQELAQQASNAQVQVSATHQQVPNNRVEFVQHHNIDMGHHAQQQHLMQQQLMNSRPEHTNQQIQLTVSEDGIVTVVEPGSSKMVEKEEMHETIKLPADHTTLTVHQLQQIVGQQVLDSVVRIEQATGEPANILVTHNPDGTTSIEASASASDPLAINVKDEKNSKMDTQYAIPAEIKELSNIKGIDLKTVGAMNMEGAVVKISTGAPEHDLHAMYKVNVEDLSQLLAYHEVFGKMGPDGQPQAKVSEVEIEVPASGSAMSEAESSPGHHACDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGTSFANHVELSRHGKCHLAGDPAERHAKRVAQDKPYACTTCHKTFLRKEHLNNHVRSHTGETPYRCEFCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHQCAICGKKFTRKEHLTNHMRSHNHDTPFRCDLCGKSFTRKEHYTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTFCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFSRKEHLNSHIRQHTGVTPHACSFCTKSFTRKEHLVNHVRKHTGETPFKCTFCSKSFSRKEHLTNHVNLHTGETPNKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHMKQHTGDAAHTCKVCQKPFTRKEHLQTHMKYHSCGERPYSCGECGKSFPLKGNLMFHERSHNKAGSGPRPFRCDICSKDFMCKGHLLTHRRTHTDAAEESATEPRVETEECLTVTTDCTNKCIKVELDVAERKIDPRSTENEQTEVVVSQPTINISPNHIVTTQTQNSVMQISSQQVRVPTTSPAGVTGTFTHTVSTQHHAGTTISHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00704247;
90% Identity: iTF_00701278;
80% Identity: -