Lsem021282.1
Basic Information
- Insect
- Lithophane semibrunnea
- Gene Symbol
- -
- Assembly
- GCA_947363905.1
- Location
- OX376208.1:3843808-3865804[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-15 9.3e-12 44.9 0.0 7 70 238 299 233 304 0.88
Sequence Information
- Coding Sequence
- ATGTCGGAGGAAATGGCGGTGTCTGATAACACAACTGGGGACGAAGCTAAAGTTAGCAACGATGAGGCAACGACGCCGACGGTGCCGGAGCCCGAGGAGGTGGCGGCGGAGACGCCGATCGAGCCTGTTGTTCCTGCTGTCGAGGAGCCCCCAGCTTTGGCGGAAGTGGACCCAGGCCCAGAAATAGAACCAAAGATCGAGAAGAAGACAGAAGTGAAAGAAGAACCAGAATTTGACTACCCTGATGTACCACTGGAGACCCCAGAAGTTGACTTAGATATTAAAAAAGAGGAAGAAGTAGATGTGAAAGATGAAATTGAGACATTTGAGCATAATATTGAGGAAGACCTTAAGAGAGGAATCAAGCGGAGAGCCTCGTTCGCTTTCAGTGATGTCGGCGATGACGAGTTTAAAGGCTTTGATGAGATCAAACTAGAAGTTAAGGCTGAAGACTACAGTCGTATTTTGGAGCGACTGGAGGCGGAGGTGACAGCAGCTAGCAGGGACCTAGTGCCACTGAGGACTGTGATGGCTACGCCCCCCGCACCCGGTAGAGCCTCCAAACGACCGCGCAAAGATACCGATGGATCTAGGCCATCATCAGCATTATCTTCAAGATCTGACGGCGACGGCGCTACTGATGCCAGTGCAACATCATCGCCCGCGCAACGGGGCGGTCGCCGAGCTACCATTGAGATGTCCTCTCCCTTACTGCGGATACCGTTGGAACGAGGCTGGAAGAGAGAGCTGGTGTACCGCGCGGCTCTGGACGCGCATTCGAGGCGTAACGCCGATATTTATTACTATACGCCTTATGGGAAGAAGCTGCGGTCTACTAGAGAGGTCTCAGAACATCTTTCCGGCACGGGACTGACAGTAGATAACTTTTCTTTCTTCAAAGAACCGCTTGGAGTTGACGACCCTGAGAAGGAAATCATAAGAGACGCTAAACTAATACGTCGCGTGGACTCCCCGGTCGCGGCGACAGCTGCGCCTGCGCAGGTGGAGGGCAAAAGGACTCCTAAGCCCAAGGCTCCTAAAGGAGCCAGTCCTGAACCAGTCCCTGCTGCCACCGCTGCAGCTGCTAACAAGTCTCCACCAGCGAAGATAAAGGTGAAATCAATGGGTTCCCGACTAAGCAACAGCGCACCACCGTCTGCACCCACGCCACCCGCCAAACAACAGAAGAAGCCGCCGCCACAACCGCCCCAACAACAACAACCGCCACCACAGTCACAACAACCACCGCCAACAACCGTCAGCAACGCAGACAACAACAACTCCGCAGCGTGGAAGAAGCCGAGGCCTCCGCCCCCCACGCCGCCGCCGCTACAGGGCCGCCCGCCCGCAGAGCCCGCGCCCGAGCCCCCCAACATAAGTTTCGCCGCTCAAAGCCCGGAAGCTCCCCGCAGGGCGGTAGTCCAGCCGTGCTCGATGTCGTGCGGGCGCGGCGCCGTGCCGTCGCTGTCGTGCGCGGCGTGCCTGTGCCTGTACCACCCCGCCTGTGCGGGCTATATGCACGCCGCGCCGCCTGACCCGTTCTTTTGCAAGAACTGCCGCAAAACATCATCCCCTCCCATCGAGCCGCCGCCCCTCACACACAAGTCCGGGATCACGACAAGCAGCATACCGGTCCCGGTGCCCATTCCCGTGCCGGTCCCGGTACTCGCGCCGGTACCGAGGCGAGTCCCCGTCCCTGTACCGGTTCCCGTGCCAACCAAAGTGCCGAGGGATAAGCGGGTGCTATTGAGAATGAAAGTAGCCGGCGGCACCCCAGACGGCGAACGCGTGTGGGCGGTAGCGGGCACGCCTCCTGTGTTACCGGCCGCGCCGGGCCCCGCGCCCGCGCCGGCCCCCGCACCGGTACCGATACCGGTCCCAGTACCGGTCCCGGTCCCCGCCGCCGTGGCCGCCCGCGCGCGGGCCCCTCGCCCGGCCCTGCCGCAGGGCCTGGCCATACTGAACGGAAGACGCTTCGTAGTTGTGCCGAGAAATATGGTGCACGCTGGAGCGGGACATGCTGCTAAATGA
- Protein Sequence
- MSEEMAVSDNTTGDEAKVSNDEATTPTVPEPEEVAAETPIEPVVPAVEEPPALAEVDPGPEIEPKIEKKTEVKEEPEFDYPDVPLETPEVDLDIKKEEEVDVKDEIETFEHNIEEDLKRGIKRRASFAFSDVGDDEFKGFDEIKLEVKAEDYSRILERLEAEVTAASRDLVPLRTVMATPPAPGRASKRPRKDTDGSRPSSALSSRSDGDGATDASATSSPAQRGGRRATIEMSSPLLRIPLERGWKRELVYRAALDAHSRRNADIYYYTPYGKKLRSTREVSEHLSGTGLTVDNFSFFKEPLGVDDPEKEIIRDAKLIRRVDSPVAATAAPAQVEGKRTPKPKAPKGASPEPVPAATAAAANKSPPAKIKVKSMGSRLSNSAPPSAPTPPAKQQKKPPPQPPQQQQPPPQSQQPPPTTVSNADNNNSAAWKKPRPPPPTPPPLQGRPPAEPAPEPPNISFAAQSPEAPRRAVVQPCSMSCGRGAVPSLSCAACLCLYHPACAGYMHAAPPDPFFCKNCRKTSSPPIEPPPLTHKSGITTSSIPVPVPIPVPVPVLAPVPRRVPVPVPVPVPTKVPRDKRVLLRMKVAGGTPDGERVWAVAGTPPVLPAAPGPAPAPAPAPVPIPVPVPVPVPAAVAARARAPRPALPQGLAILNGRRFVVVPRNMVHAGAGHAAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907070;
- 90% Identity
- iTF_00907070;
- 80% Identity
- -