Lorn004986.1
Basic Information
- Insect
- Lithophane ornitopus
- Gene Symbol
- -
- Assembly
- GCA_948473465.1
- Location
- OX419635.1:3824644-3849869[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-15 8.1e-12 44.9 0.0 7 70 238 299 233 304 0.88
Sequence Information
- Coding Sequence
- ATGTCGGAGGAAATGGCGGTGTCTGATAACACAACTGGGGACGAAGCTAAAGTTAGCAACGATGAGGCAACGTCGCCGACGGTGGCGGAGCCCGAGGAGGTGGCGGCTGAGACGCCGATCGAGCCTGTAGTTCCTGCTGTTGAGGAGCCCCCAGCTTTGGCGGAAGTAGACCCAGGCCCAGAACTAGAACCAAAAATCGAGAAAAAACCAGAAGTGAAAGAAGAACCAGAATTTGACTACCCAGATGTACCACTAGAGACCCCAGAAGTTGACTTAGATATTAAGAAGGAGGAAGAAGTAGATGTGAAAGATGAAATTGAGACATTTGAGCATAATATTGAGGAAGACCTTAAGAGAGGAATCAAGCGGAGAGCCTCGTTCGCTTTCAGTGATGTTGGCGATGAGGAGTTTAAAGGCTTTGATGAGATCAAACTAGAAGTTAAGGCTGAAAACTACAGTCGTATTTTGGAGCGACTGGAGGCGGAGGTGACAGCAGCTAGCAGGGACCTGGTGCCACTGAGGACCGTGATGGCTACGCCCCCCGCACCCGGTAGAGCCTCCAAACGACCGCGCAAAGATACCGATGGATCCAGGCCATCATCAGCATTATCTTCAAGATCTGACGGCGACGGCGCTACTGATGCCAGTGCAACATCATCGCCCGCGCAACGCGGCGGTCGCCGAGCTACCATTGAGATGTCCTCTCCCTTACTGCGGATACCGTTGGAACGAGGCTGGAAGAGAGAACTGGTGTACCGCGCGGCTCTGGACGCGCATTCGAGGCGTAACGCCGATATTTATTACTATACGCCTTATGGGAAGAAGCTGCGGTCAACTAGAGAGGTCTCAGAACATCTTTCGGGCACGGGACTGACAGTAGATAACTTTTCCTTCTTCAAAGAACCACTCGGAGTTGACGACCCTGAGAAGGAAATCATAAGAGACGCTAAACTAATACGTCGCGTGGACTCCCCGGTCGCAGCAACAGCCGCGCCCGTGCAAGTGGAGGGCAAAAGGACTCCTAAGCCTAAGGCTCCTAAAGGAGCCAGTCCGGAACCCGTCCCTGCTGCTACCGCTGCAGCTGCTAACAAGTCTCCACCAGCGAAGATAAAGGTGAAATCAATGGGTTCCCGACTAAGCAACAGCGCACCACCCTCTGCACCCACGCCACCCGCCAAACAACAGAAGAAGCCACCGCCTCAACCGCCCCAACAACAACAACCGCCACCACAGTCACAACAACCACCGCCAACAACCGTCAGCAACGCAGACAACAACAACTCCGCAGCGTGGAAGAAGCCGAGGCCTCCGCCCCCCACGCCGCCGCCGCTGCAGGGCCGCCCGCCCGCAGAGCCCGCGCCCGAGCCCCCCAACATAAGCTTCGCCGCTCAAAGCCCGGAAGCTCCCCGCAGGGCGGCGGTGCAGCCGTGCTCGATGTCGTGCGGGCGCGGCGCCGTGCCGTCGCTGTCGTGCGCGGCGTGCCTGTGCCTGTACCACCCCGCCTGTGCGGGCTATGTGCACGCCGCGCCGCCTGACCCGTTCTTTTGCAAGAACTGCCGCAAAACATCATCCCCTCCCATCGAGCCGCCGCCCCTCACACACAAGTCCGGTATCACGACAAGCAACATACCGGTCCCGGTGCCGATTCCTGTGCCGGTCCCGGTACTGGCGCCGGTACCGAGGCGAGTTCCCGTCCCTGTACCGGTTCCCGTGCCGGCCAAAGTGCCGAGGGATAAGCGGGTGCTGTTGAGGATGAAAGTAGCCGGCGGCACCCCCGACGGCGAACGCGTGTGGGCGGTGGCGGGCGCGCCTCCTGTGCTACCGGCCGCGCCGGGCCCCGCGCCCGTCCCGGTCCCGGTCCCAGTACCGGTCCCGGTCCCCGCCGCCGTGGCGGCCCGCGCGCGGGCCCCGCGGCCGGCCCTGCCGCAGGGCCTGGCCATACTGAACGGAAGACGCTTCGTAGTTGTGCCGAGAAATATGGTGCATGCTGGAGCGGGACATGCTGCTAAATGA
- Protein Sequence
- MSEEMAVSDNTTGDEAKVSNDEATSPTVAEPEEVAAETPIEPVVPAVEEPPALAEVDPGPELEPKIEKKPEVKEEPEFDYPDVPLETPEVDLDIKKEEEVDVKDEIETFEHNIEEDLKRGIKRRASFAFSDVGDEEFKGFDEIKLEVKAENYSRILERLEAEVTAASRDLVPLRTVMATPPAPGRASKRPRKDTDGSRPSSALSSRSDGDGATDASATSSPAQRGGRRATIEMSSPLLRIPLERGWKRELVYRAALDAHSRRNADIYYYTPYGKKLRSTREVSEHLSGTGLTVDNFSFFKEPLGVDDPEKEIIRDAKLIRRVDSPVAATAAPVQVEGKRTPKPKAPKGASPEPVPAATAAAANKSPPAKIKVKSMGSRLSNSAPPSAPTPPAKQQKKPPPQPPQQQQPPPQSQQPPPTTVSNADNNNSAAWKKPRPPPPTPPPLQGRPPAEPAPEPPNISFAAQSPEAPRRAAVQPCSMSCGRGAVPSLSCAACLCLYHPACAGYVHAAPPDPFFCKNCRKTSSPPIEPPPLTHKSGITTSNIPVPVPIPVPVPVLAPVPRRVPVPVPVPVPAKVPRDKRVLLRMKVAGGTPDGERVWAVAGAPPVLPAAPGPAPVPVPVPVPVPVPAAVAARARAPRPALPQGLAILNGRRFVVVPRNMVHAGAGHAAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00622852; iTF_00237601; iTF_00425410; iTF_00907910; iTF_00449130; iTF_00810093; iTF_00037841; iTF_00274453; iTF_00120534; iTF_00147481; iTF_01247008; iTF_01338784;
- 90% Identity
- iTF_00907910; iTF_00449130; iTF_00622852;
- 80% Identity
- -