Basic Information

Insect: Listrodromus nycthemerus
Gene Symbol: RREB1
Assembly: GCA_963978505.1
Location: OZ021681.1:8405186-8413200[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00089 0.064 13.7 0.0 1 23 130 152 130 152 0.98

2 15 0.00019 0.013 15.8 0.3 1 23 166 188 166 188 0.98

3 15 2.5e-07 1.8e-05 24.8 1.3 1 23 194 217 194 217 0.98

4 15 0.064 4.6 7.8 0.1 1 23 311 335 311 335 0.94

5 15 0.36 26 5.5 2.1 2 23 341 363 341 363 0.94

6 15 0.073 5.2 7.6 0.1 1 23 554 576 554 576 0.96

7 15 3.1e-05 0.0022 18.2 0.3 1 23 585 607 585 607 0.98

8 15 0.002 0.14 12.6 2.9 1 23 613 636 613 636 0.97

9 15 0.0005 0.036 14.4 3.0 1 23 1053 1076 1053 1076 0.97

10 15 0.00072 0.052 14.0 0.1 3 23 1376 1396 1374 1396 0.97

11 15 1 72 4.1 6.5 1 23 1402 1425 1402 1425 0.97

12 15 0.02 1.4 9.4 1.8 1 23 1465 1489 1465 1489 0.95

13 15 0.59 42 4.8 3.1 1 23 1636 1659 1636 1659 0.96

14 15 0.012 0.88 10.1 0.4 2 23 1709 1730 1708 1730 0.94

15 15 1.4 1e+02 3.6 8.2 1 23 1736 1758 1736 1758 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00089	0.064	13.7	0.0	1	23	130	152	130	152	0.98
2	15	0.00019	0.013	15.8	0.3	1	23	166	188	166	188	0.98
3	15	2.5e-07	1.8e-05	24.8	1.3	1	23	194	217	194	217	0.98
4	15	0.064	4.6	7.8	0.1	1	23	311	335	311	335	0.94
5	15	0.36	26	5.5	2.1	2	23	341	363	341	363	0.94
6	15	0.073	5.2	7.6	0.1	1	23	554	576	554	576	0.96
7	15	3.1e-05	0.0022	18.2	0.3	1	23	585	607	585	607	0.98
8	15	0.002	0.14	12.6	2.9	1	23	613	636	613	636	0.97
9	15	0.0005	0.036	14.4	3.0	1	23	1053	1076	1053	1076	0.97
10	15	0.00072	0.052	14.0	0.1	3	23	1376	1396	1374	1396	0.97
11	15	1	72	4.1	6.5	1	23	1402	1425	1402	1425	0.97
12	15	0.02	1.4	9.4	1.8	1	23	1465	1489	1465	1489	0.95
13	15	0.59	42	4.8	3.1	1	23	1636	1659	1636	1659	0.96
14	15	0.012	0.88	10.1	0.4	2	23	1709	1730	1708	1730	0.94
15	15	1.4	1e+02	3.6	8.2	1	23	1736	1758	1736	1758	0.98

Sequence Information

Coding Sequence: atgacCGGACTCCACCGACCAGAAACGACCGGTAACGCTCCGGCGAGGCTCTTGTCGCCGGAGAGCGCAATTTGCGTTATctcgtggaaaattaatgtcgaGCTCTCGACGGGCGGATATGATCCGTTGACGATAACGGCGTCTCAGGATCGAGTTTTATCGGTCACTATCGATCACCGATCTGTCGGCAATTCGATCGTTGAGCTTGCACGCCGGAGGACTGTCTGGCGACCGGGATCACCTCTCGGGAGTTCTCTGACGACtgtagcagcagcaggagcaacAGCTACGGCGCAACCCGAGAACGGACCGGATCATCGACACAGCAGCGAGAATCACACAGATGCAGCATCGTCGCCATTGgCTGCAGATCAACAGGAAGGAGCTTATCCGTGTCCAGCCTGTCCGATAGTTCTCTCGACATCTCGGGACTTGACGAATCATCTCCGAGGTCACAATTCGCCGCGAAGCACCGATTACAGCGGCGAGGACGATTACTCCTGCGGTGTTTGTCACAAAGTTCTGAGCTCGGCGAGCTCTCTGGACCGTCACGTGCTTGTTCATTCCGGGGAGCGTCCGTTCAAGTGCAAGTATTGCGACATGGCGTTCACTACGAACGGCAACATGAACAGACATCTGAGAACCGCTCACGGTCGTCTGTCGCCTCGCGACAACAGTTACACGGATTCCGAGGCGAGCAGCGATTCGGAAAAACCCGCGAAGAGGCGACACGTCGAGGAATACAACAACAACGAGATCGCGAAGAGAAGCTCGCCCGATCTCATCGATCAACGAGCGTCGCCGACATTCGCGGCGAAGCGCAAGTGTCCCGACTTCGCCGACGACACAGAGAATCAGAGGAAGCACAAGATACTTCTCGGTAACTCGAGAACCGAGATAAAGGGCGGTATGACCGAGACGCAGAACGTTCACAACTGTCCCGTTTGCGGTAGATTGGATTTTCCGACGAGCGCCCTTCTCGAGGCTCATCTGGAGCGCAATCATCCGGAGTTTCCGGCCAAGTGCGACGCGTGCAATCTCTCGTTCAAGAATCATCGTGTTCTCAATCTTCACAGATTCATGATCCACTACGCGGAAAATTCTTTTGGCAACAACGCGAGAAATCTACGAAACTCCGTTGTCGGCTTTCACGATTTGACTTTCGTTGATTTCTCGTCGGAGAAGTTTCCGGCCATAGCGAGAGCGGTCTGCGAGCAGTCGCTGCACCGTCCTGCCTCGGGTGAGATAGCAAAGTTTCAGTGCTGCAAGTGCCTGAGGGCTTTTCCTTGCCGCTCGGCTCTGGACGGTCACGAGCTGGATTGCGGCGTGGCGAACTCGCAGGCGCGTGTTTATGGCGACGATCAGTCGAGGAGAGACGACTTTTTCGCCGGTCTCGACCTTCAGAACAAGGCTGCCCTCACAGAGGCCAAAGAGGGCAAGGACCTCGCCGACATACAGAGCATAATATCCGTCACCTCGGGACCGATACTGCAAAATTTTCCGCGTTCCGACGCGAGCACACCCGAGCAtcagataaaaatgaatgcgAACGTCGGCTCATCGGGCTCGTCGGGAACCCCGTCATCCGAGTACCATCAGGAGGAAGAGGCGCAGGACGCGTTCGCCGCAGAATTTCGCAAGATGAAGCTCAAAGGCGAATTCCCCTGTCGACTCTGCACAGCTGTATTTCCGAACCTCCGAGCTCTCAAGGGCCACAATCGGGCTCACATGGGAGTAGGACCTGGAATGCCTTATCCCTGCAACATGTGCCCTTACACCAGCACCGACAAGGCGACTCTCGTCAGACACCTGAGGTCTCACAACGGCGATCGTCCGTTCGAGTGCTCGCTGTGCAACTACGCTTTCACGACGAAGGCGAATTGCGAGAGACACGTGAGAAACCGTCACGGTAAATTGACGCGGGAGGACATTAAGAGCGTTTTGATTTATCACCCGAGCGAGGACTACACGAACGACGGATCCCTCGAGAGAAGTTCACCGCGAGGAATAAGGGAGGACGTTCGCAAGAGTCTGGTCTATCCGAACGAGCGTGATGATTGCTACCAGCAGCAGGCACTCTACCCTGGAATGCCCGTGGAGACCAAGCAGGATCTCGGTAGCATGTCCGACGACGGACAACTCCGCTCGATGTCCATACCGTCCATTCACGGAATGTCCCTGGGTCACTACGACAAGTCCGATCTGTTCGCGCGAACGCCGGGCGTCGGCGTTCATCCGCTGGAACTCAGCCACAGAGCCGTCGACGATGCCGACAAGGGCCATCACGATCTCTCGTCGAAGTCGGACTTCGCCGGTAAACTCGACTACGACATCGACTCGAGATCATCGGAGGACGGTAGCGTTTCTCTAGTCAGCGATACCAAACCGGATAATGTACACCAAAGAGTTCAAGCTAGTCCGATAGACCTCAAGAAGAGCGCGACGGCGCCGGCTGTCGTCGGCGGTGGAGAAACTTCCACCTCGGTTACCGGCGAGGACGCGCCACTGGATCTGTCGATGGACGTTCTTGATCTTAGCAAAAAATCCAAaggaaacaacaacaataataacaacaacaacaacaacaacgctACGGACAGTCCGAGCAATCCCGACGAGCTTGGAAGAAACCAAAAGGAATTATACGACGCAACGAATCAATTCTTGCTCACCCAGGCGCTTCTGAAGGCCGGCCAGGCCGGAAATCCCACCACCTCGCTGGAAGCTCTCTACGCTAATGCGCATCTCATATACAGAAACTTTGGGGGTTTCTCGGCCGCGGGTGTCGGCAGTGGCATACTACCGCCTTATCTCTTTAATCCTCACATGTTCGGTCAGGACTTTGCGATGAAAGATCGACTACAGAAGGAGCTGGTTCGCGGATTGCAGTTGACGAGCGGCGGCACACTCGTCGAGCCGCCGATCGGCAACACGGCCTTCGCTGCCGCTTACCCGCAGGGCAGGGACATACCGGCTCACTCGATGAGCGAACAGAGCGACTACGCCAAGCTGATGTCCTCGAAGCTGCCGAATAAAATGGTCAGCccgcgcgagaaaatggaaaactcGCAGTCGTCGAATTCCGTCAAGATGGTAATTAAGAACGGTGTCTTGATGCCAAAGCAGAAACAGCGGAGATACAGAACCGAAAGACCGTTCACTTGCGAGCACTGCTCGGCCCGATTTACTCTCAGAAGCAACATGGAGAGACACATTAAGCAACAGCATCCCCAACACTGGAGTCAGAGGCCGCGAGGCGGCCACTCGACGAGGGGAAGACCGCCGGCGAATCCCCCGACGTTGCTGCACAACGCCAATCATCCCGGTGGTCAGCAACTGACGCAGACTTATCCAAACATACTTCCGAAGATCGGACAGTCGTCGGGCTCGGTGGTATACGAGAAACACTCGATATCCGATCAGGTGAAGTACGCGATTCTGGCTCAACAGCTCAAAGGAAACAAGACGGAGGAGAACGACACCGAGGAGGAATTGGTGATCGATGAGAGCGCTCACGACCGGGAGGCCGTAGGTCGCGAGGTTGACTGCGATCGTCCCACGAGCCTGCTGCGAGGAAAACTCGAGGGAAGCAATCTGTACAAGGACAACGCCGCGAGACATCAGGATCAAACTCAGGCCACCGGGTTGGTTAAGAAAACTGCGACGAAGGAGGAATCCGACGATGACGGCGAGGATGCCGAGGACCACGAAGATTTTTCACCGGTGCACATCAAGACCGAGCCTGAGGAGGACAATCACGAGGACGATTCCAAGGACTGCACGCCGAGCGATCTTTGCGTTACGGAGATGTCGAAGATCGAGCAATGCTCGCGCGACGGTatgagcgagagaaacgaggacGGCACCGCGGATCTCGCGAGCGTCTCCGAACTGCTGGACAACGCCTCACAGCAATATCAACAGTTCCAGCCCCAGTACATGAGCGACGAGGAGGGCCTTGTAGCGTCGACGAGCGACTGCAACAACTCCGGCAGCGACGAGAAATCCGATTCCGTTAATTCAGCGAACTCGGCCAATTCAaattcatcgaagaaaaaaaagaaaaagaagaagaagaagaagaagaagaagtccGCGTACTCGATGGCGCCGAACAGAGTAATATGTCCTTACTGCGAGAGGCCTTTCCCCTGGACGTCGTCCCTGAGACGGCACATTCTCACACACACCGGACAGAAACCCTACCAGTGCATGCACTGCTCGCTCCTCTTCACCACAAAATCCAACTGCGATCGTCACTTGCTCAGGAAACACAAAAACAACGCGAACAAGATACGCCGAATGAGAAACTCGTCGTCGCCGGAAGCACAAGAGGTGCCGTcaaacaacaacagcagcaccTTCGCGATGAGAAACGTTCCCGAGAGACCGTACAAATGCAATCTGTGCCCGAGCTCGACTTTCTCGACGCTCGGCAATCTCAAGAAGCACAAATCGTCGAAACACTCCAGAGGTTTCAAATCGCGGCCCGAATCGCCGGTCACCAGCGAGCCGCGGAACAGTCCCGTACCGAGCAACAAGCAGAACGATCAGAGCGGCTACGAGAGCCAGTCGTCGAGCGTCTCCGACAATGTGGATCGCATGGAGCGAATGGAGAACATTGAACAGACCGAGGCAAATCCGAAGAACGCGGAGAACGAAAAGACCGTCGAGAAGGAAAGGAACTCCGAGGAGACGGACGACCAAGAGACAGCGAAGGGCAGCGAAGTCGCCGAGACGATCGAACAGCAAATCGACAACGCCGAGAACGTCGATACCATGGAAAGCCTATCGGCCGCGGATGCCGGAACGAAGACCAACGACAGTGGGCTTGCGTCGAcgaacgaatcgtcgaaatcgCGAAGACCGTCACCGCGCTCCTCGCCCGGTCCAACGGACGCACCGTTCAAGTGCCATCTCTGCGACAGCGGATTCTCCGAGCGTCAGGATTGCCTCGAACACATCAGGATCAATCACACGAGATCCTACGAGATACTGGTTGCCAAAGGTGCTCTCGACATGGACATCGAGACTCCCGAGGAACAACAACTTCCACCTCCACAACATCTCAGCGACGGCGAAGAGAAACGCGGCAGATTTCCCGATTACAGCAACAGAAAGgtTGTTTGTGCATTCTGCATGCGTCGTTTCTGGTCGGCGGAGGATCTTCGGCGTCACATGAGGACCCACACGGGCGAACGACCGTTCTCCTGCGACATATGCTGTCGTCGTTTCACCCTGAAGCACAGTATGCTGCGTCATCGTAAGAAGCACGAGTCCGTCGACTCGACGATGTACGTCGGAACGAGCGGTGACGAGGAGTCAGCGCCCTCGCAGCCTCCGACGATAACGCCTCGTAGTCAGCAACAACAGGCGTCGATGGTGAGCACGACGAGCGGTGAGTCGAGAATTCAGGAGAGGATCTCTCTGCCGACAGTGGCGTCGGTTGCGACCGGTGACGCCGCGCCGAGCGGCCTAATGAGGTTCAATCCCTACGAGAAACTCACGACTCTAACGGGAAAATTGGCGAACGCCCAGAAAGCGTTCAACTCGAGCGACGGTGCGGACACGGAAAATGACCTGATATCGAATCTCCTTGGAATTCGTGACAAAAGCATAATCGACAAGGTGCTCCAAGCATCGGCCGATGACGCGGCAAAACTCCTCGGTGTCAACAGGAATCACGACTGA
Protein Sequence: MTGLHRPETTGNAPARLLSPESAICVISWKINVELSTGGYDPLTITASQDRVLSVTIDHRSVGNSIVELARRRTVWRPGSPLGSSLTTVAAAGATATAQPENGPDHRHSSENHTDAASSPLAADQQEGAYPCPACPIVLSTSRDLTNHLRGHNSPRSTDYSGEDDYSCGVCHKVLSSASSLDRHVLVHSGERPFKCKYCDMAFTTNGNMNRHLRTAHGRLSPRDNSYTDSEASSDSEKPAKRRHVEEYNNNEIAKRSSPDLIDQRASPTFAAKRKCPDFADDTENQRKHKILLGNSRTEIKGGMTETQNVHNCPVCGRLDFPTSALLEAHLERNHPEFPAKCDACNLSFKNHRVLNLHRFMIHYAENSFGNNARNLRNSVVGFHDLTFVDFSSEKFPAIARAVCEQSLHRPASGEIAKFQCCKCLRAFPCRSALDGHELDCGVANSQARVYGDDQSRRDDFFAGLDLQNKAALTEAKEGKDLADIQSIISVTSGPILQNFPRSDASTPEHQIKMNANVGSSGSSGTPSSEYHQEEEAQDAFAAEFRKMKLKGEFPCRLCTAVFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPFECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPSEDYTNDGSLERSSPRGIREDVRKSLVYPNERDDCYQQQALYPGMPVETKQDLGSMSDDGQLRSMSIPSIHGMSLGHYDKSDLFARTPGVGVHPLELSHRAVDDADKGHHDLSSKSDFAGKLDYDIDSRSSEDGSVSLVSDTKPDNVHQRVQASPIDLKKSATAPAVVGGGETSTSVTGEDAPLDLSMDVLDLSKKSKGNNNNNNNNNNNNATDSPSNPDELGRNQKELYDATNQFLLTQALLKAGQAGNPTTSLEALYANAHLIYRNFGGFSAAGVGSGILPPYLFNPHMFGQDFAMKDRLQKELVRGLQLTSGGTLVEPPIGNTAFAAAYPQGRDIPAHSMSEQSDYAKLMSSKLPNKMVSPREKMENSQSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPANPPTLLHNANHPGGQQLTQTYPNILPKIGQSSGSVVYEKHSISDQVKYAILAQQLKGNKTEENDTEEELVIDESAHDREAVGREVDCDRPTSLLRGKLEGSNLYKDNAARHQDQTQATGLVKKTATKEESDDDGEDAEDHEDFSPVHIKTEPEEDNHEDDSKDCTPSDLCVTEMSKIEQCSRDGMSERNEDGTADLASVSELLDNASQQYQQFQPQYMSDEEGLVASTSDCNNSGSDEKSDSVNSANSANSNSSKKKKKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCMHCSLLFTTKSNCDRHLLRKHKNNANKIRRMRNSSSPEAQEVPSNNNSSTFAMRNVPERPYKCNLCPSSTFSTLGNLKKHKSSKHSRGFKSRPESPVTSEPRNSPVPSNKQNDQSGYESQSSSVSDNVDRMERMENIEQTEANPKNAENEKTVEKERNSEETDDQETAKGSEVAETIEQQIDNAENVDTMESLSAADAGTKTNDSGLASTNESSKSRRPSPRSSPGPTDAPFKCHLCDSGFSERQDCLEHIRINHTRSYEILVAKGALDMDIETPEEQQLPPPQHLSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESVDSTMYVGTSGDEESAPSQPPTITPRSQQQQASMVSTTSGESRIQERISLPTVASVATGDAAPSGLMRFNPYEKLTTLTGKLANAQKAFNSSDGADTENDLISNLLGIRDKSIIDKVLQASADDAAKLLGVNRNHD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00414570;
90% Identity: iTF_00058943;
80% Identity: -