Lnyc005933.1
Basic Information
- Insect
- Listrodromus nycthemerus
- Gene Symbol
- -
- Assembly
- GCA_963978505.1
- Location
- OZ021682.1:1652250-1654456[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.03 2.1 8.9 1.2 1 16 194 209 194 216 0.84 2 15 0.0064 0.46 11.0 1.3 2 23 224 246 223 246 0.95 3 15 5.5e-06 0.0004 20.6 1.0 1 23 252 274 252 274 0.98 4 15 0.0012 0.089 13.2 3.0 1 23 280 302 280 302 0.97 5 15 7.4e-06 0.00053 20.2 1.2 2 23 309 330 308 330 0.98 6 15 0.0045 0.32 11.5 1.0 1 23 383 405 383 405 0.97 7 15 0.0096 0.69 10.4 0.1 1 23 411 433 411 433 0.94 8 15 0.011 0.8 10.2 3.3 1 22 450 471 450 471 0.95 9 15 1.5 1e+02 3.5 1.0 2 21 479 498 478 499 0.88 10 15 0.24 18 6.0 0.3 2 23 507 528 506 528 0.95 11 15 1.1e-08 8e-07 29.1 2.1 1 23 538 560 538 560 0.98 12 15 0.04 2.9 8.5 1.0 3 23 568 588 566 588 0.98 13 15 6.6e-06 0.00047 20.4 1.1 1 23 594 616 594 616 0.97 14 15 3.2e-05 0.0023 18.2 0.3 1 23 622 644 622 644 0.98 15 15 4e-05 0.0029 17.9 3.9 1 23 650 673 650 673 0.98
Sequence Information
- Coding Sequence
- ATGGACGCAGAACGGACTTGTGCAGCACAGCAGTCTCCCCTGAATAATGAAGTCTCCGAAATTGTAACTCTGCATCCCGAAGAGATGGAGCAAGAAGAGCTCTACACCTCCGGCGACGAGCAATTGCCCCAACAATCCTGCAAAGAAGAATCACCAGAGAAGCCAATGGAAGACCTGTCTTTGCTCTGTAGACTATGCGCTATGGCGAGCGAAGAGATGATACCGATTTTTGGTTCGCAAGAGGCAAGGAACGAAATCGCGGCGCAAATTCACGATTGTTTCCTCATCTCGGTCCACCAGATTGATGGAGTTTCGAGCAGCGTCTGCTGGACGTGTCGAGAGACTCTCGGAAGGTTCCACGATTTCCGGAGCAACGTAATGAAAACCAATGAGAAATTTAAGATGAGAACCAAAATGGATAAGAACTTCGAGCAAAAAGTATCGGATCACGATGTTGAATCAAGAAGGTCTCGCACGAACGAGCGTGTCTCGTCGGATTGCTCAGAGTTAGGGCCATGCAAGGAATCGCCCGTCGAGCACAGCGTGGAGATCAAAAAGTCTCAGCGAACCGAGGCGACTCACGAGTGTCTCGATTGCGGCAAGAAATTCGTAACGAATGAAAGGCTCGGATTTCACAGGAGTTTCCACGAGCCCGACGCTCGACCTTGCTATTGCTCGAAGTGCGACAAACTCCTTGTTTCCGAGTCGGCGCTCTACAATCATTTACGCAACGTTCATCAGAAGTACAAGGAATTCTGTTGCGACATTTGCGGAAAGCAGTTCAGAGCTCAGGCGCAGTTGGACGCTCATCAGCGCATGCACAAGGATGATCGTCCGTTCGAGTGCAACGTTTGCAACAAGCGCTTCTGCTCTACCGAGATACTGAAGCGTCACGGTCGTCTCCACTTGCCCGACAAGCCCAATCAGTGCGATCAGTGCGGCAAAAGATTCGATAGAACCAACGGTCTGACGAAGCATCTGTTGACGCACCAGGCGGAGGCTGCTCGACCGATTGCTTGTCGGGTCTGCGGCGATTGCAAGCAGGTCGTCTCGGACGAAACGGGTGATTCAGAGCATCACGACAATTGCGAGGCCGCAACCATCGAGGCTGATGGAGCGATCGTAGAGATGATGTTGAATTCCATGTACAGATGCGAATACTGCGAACGCTGTTACGCCGATGTCGAATCTGCGAAGGCTCACAAGGCTAGACACTTTGGGACGGCGCCGTACATCTGCAGGATATGCGACATATCTTACGCCACGTACAATCAAGTCACCGCTCACAAAGCGGCCCACAGAAAAAATTCGGACGGCATCGGGGACAACGCTGACGTTCCGAAATACTTCACTTGCCAATACTGCGACAAGACGTTTCTCCACTTTACTAATATGAACATTCACAGAAAAACGTGCGGCTCCGGGAGTGACCTGAGGTGTCGATGCTGCGGAAACGACTTCGCCGATTCGAAGGAACTGTCGCAGCACAAGAAGGGAACCGACGGCGACGAGAACTTGCAGTGCGACGAGTGCGATCAGGTTCTCGGATCCTTCTGCGCTCTCGCCTTACACAAGGAGAGACACGCGAAATTATCGAGGCAGAAAGAAGTCTATTCGTGCTCGGACTgcgggaaaaattttcgtcagaAAGCTCACTTGACGATCCACATGAGAATTCACACGGGGGAGAAACCCTTCGGCTGTGATTTATGCAGCAAGTCTTACCGGATCAAAGCGGATCGAGACAATCATCGGAGGACTCACACGGGCGAGCGTCCGTTCAAATGCCCACAGTGTGATAAGACCTTCGCGAATCCGGCCAGACTGCGCGAGCACAAGAAATTTCATCTCGACGTAAGGCCGTATAAGTGTGGCATATGCGATCGCGGTTTCAAGAGACCGAACGGAAGAAAAGTACACATGACTATACACACCGGTGAAAAACCTTTCAAATGCGATATCTGCGATGCGACTTTCAGGCGTTGCGGAGATATGAGAAAGCACAAGAAGACTCAGCATGTCATTGATTATACTCAAGAGTAA
- Protein Sequence
- MDAERTCAAQQSPLNNEVSEIVTLHPEEMEQEELYTSGDEQLPQQSCKEESPEKPMEDLSLLCRLCAMASEEMIPIFGSQEARNEIAAQIHDCFLISVHQIDGVSSSVCWTCRETLGRFHDFRSNVMKTNEKFKMRTKMDKNFEQKVSDHDVESRRSRTNERVSSDCSELGPCKESPVEHSVEIKKSQRTEATHECLDCGKKFVTNERLGFHRSFHEPDARPCYCSKCDKLLVSESALYNHLRNVHQKYKEFCCDICGKQFRAQAQLDAHQRMHKDDRPFECNVCNKRFCSTEILKRHGRLHLPDKPNQCDQCGKRFDRTNGLTKHLLTHQAEAARPIACRVCGDCKQVVSDETGDSEHHDNCEAATIEADGAIVEMMLNSMYRCEYCERCYADVESAKAHKARHFGTAPYICRICDISYATYNQVTAHKAAHRKNSDGIGDNADVPKYFTCQYCDKTFLHFTNMNIHRKTCGSGSDLRCRCCGNDFADSKELSQHKKGTDGDENLQCDECDQVLGSFCALALHKERHAKLSRQKEVYSCSDCGKNFRQKAHLTIHMRIHTGEKPFGCDLCSKSYRIKADRDNHRRTHTGERPFKCPQCDKTFANPARLREHKKFHLDVRPYKCGICDRGFKRPNGRKVHMTIHTGEKPFKCDICDATFRRCGDMRKHKKTQHVIDYTQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00059628; iTF_00721448; iTF_00058902; iTF_01364856; iTF_00058140;
- 90% Identity
- -
- 80% Identity
- -