Scul021008.1
Basic Information
- Insect
- Stenichneumon culpator
- Gene Symbol
- -
- Assembly
- GCA_964017025.1
- Location
- OZ024780.1:8647068-8649378[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0083 0.81 10.7 1.5 1 19 129 147 129 151 0.78 2 15 0.0063 0.61 11.1 1.3 2 23 159 181 158 181 0.95 3 15 3.9e-05 0.0037 18.1 1.1 1 23 187 209 187 209 0.98 4 15 0.00013 0.012 16.4 4.1 1 23 215 237 215 237 0.98 5 15 7.2e-06 0.0007 20.4 1.2 2 23 244 265 243 265 0.98 6 15 0.0043 0.42 11.6 1.0 1 23 318 340 318 340 0.97 7 15 0.0057 0.55 11.2 0.1 1 23 346 368 346 368 0.94 8 15 0.011 1.1 10.4 3.3 1 22 385 406 385 406 0.95 9 15 0.79 77 4.5 1.0 2 21 414 433 413 434 0.89 10 15 0.015 1.4 10.0 0.4 2 23 442 463 441 463 0.96 11 15 1.1e-08 1e-06 29.3 2.1 1 23 473 495 473 495 0.98 12 15 0.033 3.2 8.8 0.9 3 23 503 523 501 523 0.97 13 15 5e-06 0.00048 20.9 1.7 1 23 529 551 529 551 0.97 14 15 3.1e-05 0.003 18.4 0.3 1 23 557 579 557 579 0.98 15 15 0.00013 0.012 16.5 1.4 1 23 585 608 585 608 0.98
Sequence Information
- Coding Sequence
- ATGGACACAGATGTGGCTTGTCCTGCGATACAGCAGTCTCCTTTGAATATAGAAACCTCCGGAACTATTCACGATTGTTTTCGAATCTCGGTTCGCGAGATCGACGGTGTTTCGAGCAGCGTCTGCAGGACGTGCCGGGAGAGTCTCGGAAGGTTTCACGATTTCCGGAGCAACGTACTGAGAGCCAACGAGAAATTTAAGACGAGAGTCGAAACGGGCGACAAGTCCGAGCGAAAAGTCTTAACCGATGTCGAATCGAGAAAATCTCGGACGCACAAGCGTGCTTCCTCGGATTCCTCCGAGCCAGTCCCGTGCGAGGAATCGCCCGCCGAGCACAGCTCGGACCGCGCGGAGGTCAAAAAGTCTCAGCGAACCGAGGCGAAACACGAGTGTCCCGATTGCGGGAAGAAATTCGTGACCGATGAGAGGCTCGAATTTCACAGGAGTTTCCACGAGCCCGACGCTCGTCCTTGCTACTGCTCGAAGTGCGACAAACTCCTCGTCTCCGAGTCGGCGCTTTACAATCATCTGCGGAACGTTCATCAGAAGTACAAGGAATTCTGTTGCGACATATGCGGCAAGCAATTCAGAGCTCAGGCGCAGATGGACGCCCATCAGCGCATGCACAAGGACGATCGTCCGTTCGAGTGCAACGTTTGCAACAAGCGCTTCTGCTCGAGCGAGATACTCAAGCGTCACAGGCGTCTGCACTTGCCCGACAAGCCCAATCAGTGCGATCAGTGCGGCAAGAGATTCGACAGAACCAACGGTCTGACGAAGCATCTGCTGACGCACCAAGCGGAAGCCGCTCGACCGATGGCTTGTCGAGTTTGCGGCGATTGCAAGCAGGTCGTCTCGGACGAAACGAGCGATTCGGAGCGTCACGACGATTGCGAGGCCGCGGCCGACGAGGCGTGTCGAGGAATCGTGGAGATGATGTTGAATTCCATGTACAGATGCGAGTACTGCGAACGCTGTTACGCCGATGTCGAATCCGCGAAGGCTCACAAGGCTCGACACTTCGGAGCGACGCCGTATGTTTGCCGGATATGCGATATATCTTACTCCACGTACAATCAAGCCACCGCTCACAAAGCGGCCCACAGGAAAAATTCGGACGCCAATAGTGACAGCGCCGACGTTCCGAAATATTTCACTTGCCAATATTGCGACAAGAcatttctgcactttactaaCATGAACATTCACAGAAAGACGTGCGGCTCCGGGAACGACCTGAGGTGTCGGTGCTGCGGCAACGACTTCGCCGATTCGAAGGAACTCTCGCAGCACAAGAGGGGAACCGACGGCGACGAAAACTTACAGTGCGACGAGTGCGATCTCGTTTTTGGATCTTTCTGCGCTCTCGCCCTACACAAGGAGAGACACGCGAAACCGTCCAAGCAGAAAAAAGTCTATTCGTGCTCGGACTGtggaaaaaattttcgtcagaaAGCTCACCTGACGATCCACATGAGAATCCACACTGGGGAGAAACCGTACGGCTGTGATTTGTGCAGCAAGTCTTACAGGATCAAAGCGGATCGCGACAATCATCGAAGGACCCACACGGGCGAGCGACCGTTCAAGTGCCCGCAATGCGATAAAACCTTCACGAGCCCGGCGAGACTCCGCGAgcacaaaaaatttcatctcgATATAAAACCATACAAGTGTGGCATATGCGATCGCGGTTTCAAAAGACCGAACGGGAGAAAAGTACACATGACTATACACACCGGTGAAAAACCTTTCAAATGCGATATTTGCAATGTGTCTTTCAGGCGGGGCCCAGATATGAGGAAGCACAAAAAAACTCAACATTTCATCAATGTTACCCAAGAGAAATAa
- Protein Sequence
- MDTDVACPAIQQSPLNIETSGTIHDCFRISVREIDGVSSSVCRTCRESLGRFHDFRSNVLRANEKFKTRVETGDKSERKVLTDVESRKSRTHKRASSDSSEPVPCEESPAEHSSDRAEVKKSQRTEAKHECPDCGKKFVTDERLEFHRSFHEPDARPCYCSKCDKLLVSESALYNHLRNVHQKYKEFCCDICGKQFRAQAQMDAHQRMHKDDRPFECNVCNKRFCSSEILKRHRRLHLPDKPNQCDQCGKRFDRTNGLTKHLLTHQAEAARPMACRVCGDCKQVVSDETSDSERHDDCEAAADEACRGIVEMMLNSMYRCEYCERCYADVESAKAHKARHFGATPYVCRICDISYSTYNQATAHKAAHRKNSDANSDSADVPKYFTCQYCDKTFLHFTNMNIHRKTCGSGNDLRCRCCGNDFADSKELSQHKRGTDGDENLQCDECDLVFGSFCALALHKERHAKPSKQKKVYSCSDCGKNFRQKAHLTIHMRIHTGEKPYGCDLCSKSYRIKADRDNHRRTHTGERPFKCPQCDKTFTSPARLREHKKFHLDIKPYKCGICDRGFKRPNGRKVHMTIHTGEKPFKCDICNVSFRRGPDMRKHKKTQHFINVTQEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00905592;
- 90% Identity
- -
- 80% Identity
- -