Basic Information

Insect: Amblyjoppa proteus
Gene Symbol: -
Assembly: GCA_963922035.1
Location: OY998233.1:1572209-1574578[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.012 1.2 10.2 0.8 1 12 189 200 189 211 0.87

2 15 0.0063 0.61 11.1 1.4 2 23 219 241 218 241 0.95

3 15 4.3e-05 0.0042 17.9 1.1 1 23 247 269 247 269 0.98

4 15 0.0003 0.028 15.3 2.8 1 23 275 297 275 297 0.97

5 15 8.1e-06 0.00078 20.2 1.2 2 23 304 325 303 325 0.98

6 15 0.0086 0.83 10.7 1.8 1 23 378 400 378 400 0.97

7 15 0.018 1.7 9.7 0.1 1 23 406 428 406 428 0.94

8 15 0.012 1.2 10.2 3.3 1 22 445 466 445 466 0.95

9 15 2.3 2.2e+02 3.1 0.8 2 21 474 493 473 494 0.89

10 15 0.048 4.7 8.3 0.5 2 23 502 523 501 523 0.96

11 15 8.3e-09 8e-07 29.6 2.2 1 23 533 555 533 555 0.99

12 15 0.037 3.5 8.7 3.6 1 23 561 583 561 583 0.98

13 15 2.2e-05 0.0021 18.9 1.4 1 23 589 611 589 611 0.97

14 15 3.5e-05 0.0033 18.2 0.3 1 23 617 639 617 639 0.98

15 15 5.7e-05 0.0055 17.5 5.0 1 23 645 668 645 668 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.012	1.2	10.2	0.8	1	12	189	200	189	211	0.87
2	15	0.0063	0.61	11.1	1.4	2	23	219	241	218	241	0.95
3	15	4.3e-05	0.0042	17.9	1.1	1	23	247	269	247	269	0.98
4	15	0.0003	0.028	15.3	2.8	1	23	275	297	275	297	0.97
5	15	8.1e-06	0.00078	20.2	1.2	2	23	304	325	303	325	0.98
6	15	0.0086	0.83	10.7	1.8	1	23	378	400	378	400	0.97
7	15	0.018	1.7	9.7	0.1	1	23	406	428	406	428	0.94
8	15	0.012	1.2	10.2	3.3	1	22	445	466	445	466	0.95
9	15	2.3	2.2e+02	3.1	0.8	2	21	474	493	473	494	0.89
10	15	0.048	4.7	8.3	0.5	2	23	502	523	501	523	0.96
11	15	8.3e-09	8e-07	29.6	2.2	1	23	533	555	533	555	0.99
12	15	0.037	3.5	8.7	3.6	1	23	561	583	561	583	0.98
13	15	2.2e-05	0.0021	18.9	1.4	1	23	589	611	589	611	0.97
14	15	3.5e-05	0.0033	18.2	0.3	1	23	617	639	617	639	0.98
15	15	5.7e-05	0.0055	17.5	5.0	1	23	645	668	645	668	0.98

Sequence Information

Coding Sequence: ATGGATCTAGATTTGGCTTACCCTACGGAACAGCAGTCTCCCTTGAATATTGAAACCTCAGGGACTGTAACTCTGCGACCCGAAGAGATGGAGCAAGAAGAACTCTACACGTCCGGCGAGGAGCAACCGCCGCTTCCCCGTCAATCCCGCATAGAACGGACATCAGAAAAGCCTATGGAAGATCTATCATCGCTCTGCAGATTATGCGCCACGGCAAGTGACGAGATGGTACCGATTTTCGGCTCGCCGGTACCGAGGAGCGAAATCGCTAAGCAGATTCACGATTGTTTTCAAATCTCGGTTCGCGAGATTGACAGTGTTTCGAGAAGCGTCTGCAGGGCGTGTCGCGAGAGCCTCGAAAGATTTCACGATTTCCGTAGCAAAGTAATGAGAGCGAACGCGAAATTTAAGACGAGAGTCGATCAGGATGTCGTGTCGAGAAAATCTCGCGCGCATGAGCGTGCCTCGTCGGATTCCTCCGAGCTAGTCCCGTGCGAGGAATCGCCTGCTGAGCACAGCTCGGATCTCGCGGAGGGCAAAAGGTCTCAGCGAACCGAGCCGAATCACGAGTGTCCCGATTGCGGCAAGAAATTCGTGACCGACGAGAGGCTCGGATTTCACAGGAGTTTCCACGAGCCCGACGCTCGTCCTTGCTACTGCACGAAGTGCGACAAACTCCTCGTCTCCGAGTCGGCGCTTTACAATCATCTGCGCAACGTTCATCAGCAATACAAGGAATTCTGTTGCGACATATGCGGCAAGCAGTTCAGAGCTCAGGCGCAGATGGACGCCCATCAGCGCATGCACAAGGACGATCGTCCGTTCGAGTGCAACGTCTGCAACAAGCGCTTCTGCTCGAGCGAGATACTCAAGCGTCACGGCCGTCTCCACTTGCCCGACAAGCCAAATCAGTGCGATCAGTGCGGCAAGAGATTCGACAGAACGAACGGTCTGACGAAGCATCTGCTGACGCACCAGGCGGAGGCCGCTCGGCCGATTGCTTGTCGAGTTTGCGGCGATTGCAAGCAGGTCGTCTCTGACGAAACGGGCGACTCGGAGCGTCACGACAATTGCGAGGCCGCGACCGACGAGGCCCCACAAGGGATCGTAGAGATTATGCTGAATTCCATGTACAGATGCGAGTACTGCGAACGCTGTTACGCCGATGTCGAATCGACGAAAGCTCACAAGGCAAAACACTTCGGTGCGACGCCGTACGTTTGCCGGATATGCGATATATCTTACGCCACGTATAATCAAGCCACCGCTCACAAAGCGGCGCACAGAAAAAATTCTGACGCCGCCGGGGACAACGCCGACGTTCCGAAATACTTCACTTGCCAATACTGCGACAAGACGTTTCTCCACTTCACTAATATGAACATTCACAGAAAGACGTGTGGCTCCGGGAACGACCTGAGGTGTCGGTGCTGCGGCAACGACTTCGCCGATTTGAAGGAACTCTCGCAGCACAAGAGGGGAACCGGCGGCGACGAGAACTTGCAGTGCGACGAGTGCGATCTGATTTTTGGATCTTTCTGCGCTCTCGCACTACACAAGGAGAAACACGCGAAACCGTCGAGACAGAAAAAAGTCTACACGTGCTCGGACTGCGGGAAAAATTTTcgtcagAAAGCTCACCTGACGATTCACATGAGAATTCACACGGGCGAGAAACCGTACTGCTGCGATTTATGCAGCAAGTCTTACAGGATCAAGGCGGATCGCGACAATCATCGCAGGACCCATACGGGTGAGCGTCCGTTCAAGTGCGAGCAGTGCGATAAGACGTTCGCGAATCCGGCGCGACTACGTGAGCACAAGAAATTTCATCTCGACATAAGGCCGTACAAGTGTGGCATATGCGATCGCGGTTTCAAGAGACCGAACGGGAGAAAAGTACACATGACTATACACACCGGTGAAAAACCTTTCAAATGCGATATCTGCAACATGTCTTTCAGGCGATGCGGCGATATGAGGAAGCACAAGAAAACTCAGCATATCATCGATGTTACCCAAGAGAAATAA
Protein Sequence: MDLDLAYPTEQQSPLNIETSGTVTLRPEEMEQEELYTSGEEQPPLPRQSRIERTSEKPMEDLSSLCRLCATASDEMVPIFGSPVPRSEIAKQIHDCFQISVREIDSVSRSVCRACRESLERFHDFRSKVMRANAKFKTRVDQDVVSRKSRAHERASSDSSELVPCEESPAEHSSDLAEGKRSQRTEPNHECPDCGKKFVTDERLGFHRSFHEPDARPCYCTKCDKLLVSESALYNHLRNVHQQYKEFCCDICGKQFRAQAQMDAHQRMHKDDRPFECNVCNKRFCSSEILKRHGRLHLPDKPNQCDQCGKRFDRTNGLTKHLLTHQAEAARPIACRVCGDCKQVVSDETGDSERHDNCEAATDEAPQGIVEIMLNSMYRCEYCERCYADVESTKAHKAKHFGATPYVCRICDISYATYNQATAHKAAHRKNSDAAGDNADVPKYFTCQYCDKTFLHFTNMNIHRKTCGSGNDLRCRCCGNDFADLKELSQHKRGTGGDENLQCDECDLIFGSFCALALHKEKHAKPSRQKKVYTCSDCGKNFRQKAHLTIHMRIHTGEKPYCCDLCSKSYRIKADRDNHRRTHTGERPFKCEQCDKTFANPARLREHKKFHLDIRPYKCGICDRGFKRPNGRKVHMTIHTGEKPFKCDICNMSFRRCGDMRKHKKTQHIIDVTQEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00905592;
90% Identity: iTF_00058140;
80% Identity: -