Lnyc002930.1
Basic Information
- Insect
- Listrodromus nycthemerus
- Gene Symbol
- egg
- Assembly
- GCA_963978505.1
- Location
- OZ021680.1:10571874-10576393[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.55 2.3e+03 -1.8 0.1 19 41 560 583 557 598 0.73 2 2 1.7e-13 7.3e-10 38.2 0.1 5 70 628 687 625 693 0.89
Sequence Information
- Coding Sequence
- ATGTCTCGGGTAGAAACGGCTGAAATTATAGAACTTTGCTCTGACGAGGAGACGTCTGAGAAACCTGACGCGACCAACAAGAAATGCTCGAAAACGTACATCAATtgcataaattttcaatgttcGTCGGGTGTCGACTTAAAAATAGCGCCGTCGTTCGCTTGCGCGTTTTACGGCGTCAATTCCATAAAGAAGCGAAAACGAATGATATGCGCAAGGTGCTTCAATATAGCAATGGAACACCAGGAGAAACTAGCCACGGCTCTGGTAAATAGAACACCGATACTCAAGTGTGAATTTCCCGATCACACAATGGAAGTAGAGATATCGGACAGCGAAGACTCAGACGATGATAAAAAGGATCTGGACGATCACGGTAATCATTTACCAGAGGATGTTCTTTTGGATATAGAGAAAAAACTGGAGCCAGCTTTAAgtaatgtttttcaaaaatatgatatcgATTATCAGATAACAGCTTCACacaacatattaaaaaatcaatgggaTCAGATCAATGACACAAATCAAATTCTGGACAATGATATAATGTCGATGATAAAGCAAATGGACTCTCTACGCAACAGTTTGTATAGCGGTTGCGTGCCCGAGATAAGAATGCTTGAGGAGCTTCAGATTCACGATCCCCCGCCCGCGAAATCGCCGATGGTCGTGCCAAAGAATTTACCGACTGAACAAAGTCCGTCTAACTTCGCGGACAGCGAAGTAACCCCGTTACATGCGGTGAATCGGAGTTTGGGTTACGATTTGCCGCCTCAAGGTCCTTTCAGCAAACAGTTTCCCGAAGTCGAGACGAAGGTATTTGTCATGAAGCATCCCTTGATGCCGTGGGTGAGAGGAAAGGTCCAGCAGGTCATCGCACGCTCCCCTATTCAATGCCGTGTCAAACTTTCCGGACGTAGAAGTAACGGAGCTATGAGAACGTTAACCGGTAAGCAGATCGCTAACGCTGTGCCATGTTCGGTGATAATTCCCGTTGCTACGAGAGTCGTTGCTGTGTTCTTCGATGCAAACTCCAGCGATTACTACAGCGGAGTTATCGCCGAGCCTCCGAAATCAACAAATCGCTACAGATACCTggtatttttcgacgatggcTATGCCCAGTACGTCGTTCACAAATACATATGTATCGTTTGCGAAAGTTCGAGCTGCGTTTGGGAAGATATTCCTCCAGAGTCTCGAGATTTTGTGAAGAAATATTTGGAGACGTATCCGGAAAGACCGATGGTGAAACTGCTGCCCGGACAAGTAGTAAAAACGGAATGGAACGGAAAGTGGTGGATCGCCCGAGTGGTACAAGTCGATGGCAGCTTGGTGCAGATGCACTTTGACGCCGACGATCGTACAGAGTGGATTTATCGAGGTTCAGCAAGACTGGGGCCTCTTTACCTTGAATTCTTAAAAGCAAACGCTAGGCAACAGGGTCATCATGCTTCTGCCAATACACCGAGTCGACATCGACTCCCGCCACCGGCTCACaaaaataatgcgcCGTACGTCGAGTACACATCATTTAATCCCGAATTGGAGTACGAACAGTCTAACGACGCTTCGGTCAGCGCATCGGCAAAGTCAGAGACGAGCTCCGTTGGAAAAGCTGCGCCTGCGACACCCGCGAGTACAGCGACTCCGGCTGCTCCGCAGTCTCGGGCAGTAGCAAAGAAGAGCACGACCAAAAGACAGGGTACCGTGGACGTCGGGGCTTACGTTGCCCCCACAACCGAAACAAAACCTTCGCACAGTATAGTCTATTATCAGACACAAAATAGGATTCAGACTCGCAAATTTGTGGTGCACAAGTGCGGCCCGCATTGCGTGAAAGGAATAACATTTACGCCGGACGATCTTAAGGGATACTCGCCGCTTTCGATACCGCTTCTGTGCGGTTGGAACCGGCAACTGTGCAAGTTTCCGAAAGGCAAAAAAGTCACTCTCTATCAAGCTCCATGTGGCGTTCGTCTACGTAACATGGAAGAACTACATAAATATCTCCGTACAACACGCAGTCCAATGTCCGTCGATTTGTTTGATTTCGACTACTGGGTGCACTGTTTAGCTGAATTCGTCCTTGACAAGTGTTTTGTCAATATCAAAGATCTCAGTTACGGTGTCGAGAATGTACCGATTCCTTGCGTTAATGAAATCGATCACGCTCTACCGGATACCATACGATACAGCACGCAGAGGGAACCGACGGAGGGTGTGAATATTAATTTGGATCCTGAATTTTTGTGCAGCTGCGACTGTACGGACGATTGTCAGgaCAAGACAAAGTGTCAATGCTGGCAATTGACGATCCAAGGCGCAACTCTCGGCGGTCGGGTACCAAATAACGCAGTCGGCTACGCTTACAAAAGGCTACCCGAGCCCGTCACTACAGGAATCTATGAGTGTAATTCAAGATGCAAATGTGCCGTAAAAACTTGTCTCAACAGAGTCGTTCAGCATCCTCTCACATTGAAGCTACAAGTGTTCAAAACAGCCCCTAGAGGTTGGGGCATCAGGTGTCTTAATGATATTCCTCTAGGATCCTTCATATGCATTTACGCCGGAAGATTACTCACCGAGCAGGGAGCGAACGAGGGGGGTAAGAACTATGGCGATGAGTATCTTGCAGAGCTCGATTACGTGGAAGTCGTCGAAGGTATAAAAGAGGGCTACGAGAGCGATGCATTGGATCCCGAAGGGCCACTCGAGGAACCAGCAAAGTCACAAAAAGCCGCACCGTCTGTAAGCGACGAGGAAATTCCCAGTAAAAAGACCACTGGTGAATCTGACGAGGACTTCAATATAAATCTTCATAAGGGATACAGCGACCTTGAGCTTGAGTCAGAGCCAACTTCCATAAGAAAACGGTtgaggaaacgaaagaaaagtgaagaaaTCAGCGGTCAGGATGGCTCGGAGGATCGCAGTGAGGATGGCAGTGTTACGAAAGGTTCAGACTCTTCAACGGTAAAGTCAACTAGTCAAGACGCTAATGAGATATTAATAAGCGACGATGAGGATAGTAATAGCACCAATAAGGGACGACGGGAGCCAAGCAGGTTTGAGCCGAATCTCGAGCCTACGGAGGTTAAGAGGCCCACGCTAAAATCCGTACGTGATTTCTTCGGCGAGGACGAAGCCGTTTATATAATGGACGCAAAAACTACGGGGAATATCGGTCGTTATCTAAACCACTCTTGTGATCCAAACGTTTTCGTACAAAACGTCTTTGTCGATACCCACGACGTAAGATTTCCATGGGTAGCGTTTTTCGCTCTGAACTACATAAGAGCCGGCCAGGAATTGACGTGGAACTACAGTTACGACGTAGGAAGTATACCCGGCAAAGTCATCATATGTAGGTGCGGTGCATCAAATTGTCGCGGACGTTTATTGTAA
- Protein Sequence
- MSRVETAEIIELCSDEETSEKPDATNKKCSKTYINCINFQCSSGVDLKIAPSFACAFYGVNSIKKRKRMICARCFNIAMEHQEKLATALVNRTPILKCEFPDHTMEVEISDSEDSDDDKKDLDDHGNHLPEDVLLDIEKKLEPALSNVFQKYDIDYQITASHNILKNQWDQINDTNQILDNDIMSMIKQMDSLRNSLYSGCVPEIRMLEELQIHDPPPAKSPMVVPKNLPTEQSPSNFADSEVTPLHAVNRSLGYDLPPQGPFSKQFPEVETKVFVMKHPLMPWVRGKVQQVIARSPIQCRVKLSGRRSNGAMRTLTGKQIANAVPCSVIIPVATRVVAVFFDANSSDYYSGVIAEPPKSTNRYRYLVFFDDGYAQYVVHKYICIVCESSSCVWEDIPPESRDFVKKYLETYPERPMVKLLPGQVVKTEWNGKWWIARVVQVDGSLVQMHFDADDRTEWIYRGSARLGPLYLEFLKANARQQGHHASANTPSRHRLPPPAHKNNAPYVEYTSFNPELEYEQSNDASVSASAKSETSSVGKAAPATPASTATPAAPQSRAVAKKSTTKRQGTVDVGAYVAPTTETKPSHSIVYYQTQNRIQTRKFVVHKCGPHCVKGITFTPDDLKGYSPLSIPLLCGWNRQLCKFPKGKKVTLYQAPCGVRLRNMEELHKYLRTTRSPMSVDLFDFDYWVHCLAEFVLDKCFVNIKDLSYGVENVPIPCVNEIDHALPDTIRYSTQREPTEGVNINLDPEFLCSCDCTDDCQDKTKCQCWQLTIQGATLGGRVPNNAVGYAYKRLPEPVTTGIYECNSRCKCAVKTCLNRVVQHPLTLKLQVFKTAPRGWGIRCLNDIPLGSFICIYAGRLLTEQGANEGGKNYGDEYLAELDYVEVVEGIKEGYESDALDPEGPLEEPAKSQKAAPSVSDEEIPSKKTTGESDEDFNINLHKGYSDLELESEPTSIRKRLRKRKKSEEISGQDGSEDRSEDGSVTKGSDSSTVKSTSQDANEILISDDEDSNSTNKGRREPSRFEPNLEPTEVKRPTLKSVRDFFGEDEAVYIMDAKTTGNIGRYLNHSCDPNVFVQNVFVDTHDVRFPWVAFFALNYIRAGQELTWNYSYDVGSIPGKVIICRCGASNCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01129349;
- 90% Identity
- iTF_00059458; iTF_01364649; iTF_00721261; iTF_00058707; iTF_00057948;
- 80% Identity
- -