Basic Information

Insect: Listrodromus nycthemerus
Gene Symbol: -
Assembly: GCA_963978505.1
Location: OZ021682.1:11985979-11993698[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1e-12 1.1e-09 37.8 0.0 1 39 331 370 331 374 0.90

2 4 3.2e-12 3.3e-09 36.2 0.1 2 39 386 423 385 426 0.94

3 4 1.2e-18 1.2e-15 56.8 0.0 2 45 441 485 440 485 0.97

4 4 1.4e-18 1.4e-15 56.6 0.0 1 42 492 534 492 535 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1e-12	1.1e-09	37.8	0.0	1	39	331	370	331	374	0.90
2	4	3.2e-12	3.3e-09	36.2	0.1	2	39	386	423	385	426	0.94
3	4	1.2e-18	1.2e-15	56.8	0.0	2	45	441	485	440	485	0.97
4	4	1.4e-18	1.4e-15	56.6	0.0	1	42	492	534	492	535	0.97

Sequence Information

Coding Sequence: ATGCCGATGCACTTCGACACATGCGAACTCGGCATCGAACCAAAATATCTTATTCATCATCACCGAAGTGTTCTGTCAACGAGAATTCGTATCGTCGGTACGGAAATTCCATTACACGGAGGTCGAGCTGAAGTTATCATGTCGATGGAGACAAGAATTACCGTGGCGCGTACGTCCTTGCTGAAGACGGCCGATCAGTTGAAAATCAAGGGCCTCTGCGAGGTCCCGGAGAGCAGAGAAGGACCGCCGTCGGTGAGCCTGAGTTCGCCACCGCCCCGCGATACCGGCACGACGAGGCTGAACTACACGAAACTGAAGAGGCATCATCCGAGGTACAAGAGGCAGAGAACTACGTTCGAGCCACGGGCAACGAGTACGGATTCGCGTCACTACGACAAGTACAAAGAGGAAGAGCACGAAATCGAGGGCCTCGGCCGTGACAACAACAAAGAGAACCACAGAGGCGACTGGCAGACGGAGGATGAGGAGTGTGGCGCGGAGACAGCATCAGTAGTCCTGGAATCCTGCCAGCGCGACAGCAACAACGGTAACGGCACAAACAACAATAACGGTGACATGTTTTGTCACACAGGTCTAGGTCATTACGGTCATCATCCGGATCCTGGAGAGGTCGACCTACCGCCAGAGACCCAGCCAACACCACCCAGCGCGACGCTCGTCGGCACGACGATAACGCATCTGCGCGACACCGATCATCACTCGACCGACATTCAGAACTGTGACAGCGTCAAGATAAAATTCGAGACGCTTCACACAATGGATTCGTCGGACACGATCGACATCGACAGCCACATGTCGGATCGGGCAAGCGTTAGTTCGAAACATGCCGCCGAGAGCGACAACATGATGATGATAACGCCGGAACTTTTGGGTCTCATGCCTTCCGGCAGCTCGGTACATTCGGACTCCGGCGAGAATAATTCCCGAGGCGGAGGGTCTGGCTCACATCATCACGGATCGAAATCTTGGACGCAGGAGGACATGGATGCGGCTCTCGAGGCTCTAAGGAACCACGATATGAGCCTTACGAAAGCGTCAGCGACCTTTGGAATCCCCTCGACGACGCTGTGGCAAAGAGCTCACAGACTGGGCATAGACACGCCGAAGAAGGACGGCCCGACTAAATCGTGGAGCGACGAGAGTTTGAACAACGCTCTTGAAGCTCTCAGAACCGGTACGATATCCGCCAATAAAGCGTCGAAGGCGTTCGGCATACCATCCAGTACACTGTACAAAATCGCAAGGAGAGAAGGCATAAGGCTCGCGGCACCTTTCAACGCTAGTCCAACAACATGGTCGCCGGCCGACCTCGACAGAGCCCTCGAAGCTATAAGGTCCGGTCAAACGTCGGTGCAGCGAGCGTCTACGGAGTTTGGTATCCCTACCGGAACTCTTTACGGGAGATGCAAGAGGGAAGGCATCGAGTTGAGCAGAAGCAATCCTACGCCTTGGAGCGAAGACGCGATGACGGAGGCACTCGAGGCCGTCAGGTTGGGTCACATGAGCATCAATCAGGCCGCCATTCACTACAATCTCCCGTACTCGTCGCTTTATGGAAGATTCAAGAGGGGAAAGTATGAGGATCCTGTGGTCAGCGAGATGTCGCAAGACGGAAGCAATCCACATTTTCATTCGCATCAGAGTCCACATCAGAATCACTCGTCCTCCCTACCCGATCAAATGCCTTATCAGGGTAGCTGA
Protein Sequence: MPMHFDTCELGIEPKYLIHHHRSVLSTRIRIVGTEIPLHGGRAEVIMSMETRITVARTSLLKTADQLKIKGLCEVPESREGPPSVSLSSPPPRDTGTTRLNYTKLKRHHPRYKRQRTTFEPRATSTDSRHYDKYKEEEHEIEGLGRDNNKENHRGDWQTEDEECGAETASVVLESCQRDSNNGNGTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDTDHHSTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKHAAESDNMMMITPELLGLMPSGSSVHSDSGENNSRGGGSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEDPVVSEMSQDGSNPHFHSHQSPHQNHSSSLPDQMPYQGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_01560354;
80% Identity: -