Lsab008612.1
Basic Information
- Insect
- Lissocephala sabroskyi
- Gene Symbol
- Znf574
- Assembly
- GCA_037075105.1
- Location
- JBAMCP010001702.1:9613-11853[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0034 16 6.3 0.2 27 50 336 359 333 363 0.89 2 7 0.0013 6.1 7.7 0.1 21 48 452 479 445 481 0.88 3 7 0.00097 4.5 8.1 0.1 26 52 486 512 479 516 0.84 4 7 0.026 1.2e+02 3.5 0.0 23 48 517 542 510 547 0.88 5 7 0.00036 1.7 9.5 0.8 26 48 550 572 543 577 0.89 6 7 1.6 7.3e+03 -2.2 0.0 22 43 575 596 572 599 0.83 7 7 0.54 2.5e+03 -0.7 0.2 19 45 600 626 584 632 0.71
Sequence Information
- Coding Sequence
- ATGGCCAGCTGTGTCCTTTGCCTGGAGAGCCTCGGTGAAATTCGCCAATCAATTGCCGTTGGATCCGCCGAGGGCTTGCGGCTCAAAATTTGCGAAGCCGTCAACAAGCATTTTTGGCTGGAGCTCACCATCAATGGACACACCGATGCCCGCAAACGAATCTGCCTTGAGTGCTGGCAGTACGTCAAGAGCTTCAACGAGTTCTACCAGCGCGTCTACGAAATCCACGCCCAGCAAAGGCAAAGCCTGGGCAGGAGCGCCCCGATTGAGTTCTTTGCCGAGCCCTTGAATCCCCTGGGCCCTGAGGACAACACCTCGGAGATAGatgccctggccgagggcttCTTCGCACCCAACGACATTAAAGTGGAAATACACGAGCTGGAAATGCTGCCCAAGGATGCCGAGCTTCAGGATCCTGTGGACACGACGACGCCCATGCCCCACACCACCAGCAAGAAGCTAGGCAACAACCCGGGCTCGGCCAGTGGCAGAAAGAAGGTCAAGTGCGAGAAAATCTCGGCTGGCAGTGACTCGGAAGTCGATATTCCGCTGGCGGACTTCCTGACCACAGACATCAAGACTGATTCGAATACCTCGATCCCCTCGCCGGAGGAAACGAAGCGCAAGCAGCCCCTGCGCCGTTCAGGTCGCATGCGCAAATCCAGCTCAGCTGCCTCCGCCTGGGACCTAAAGGAGGAGCTGGAGTCCGACGTGGACATAGGCGACTTCGAGTTTGGACCtgccgccgggctgggcaCTGACGACAGCTCCACCTCCAGTTCCAGCAGTGAGGAAGACTCCGCAGACAGCCTGCCAGATGTGGAGCCCGTCGAGCGCTACGCCGTGATACCCAAGCGCGTGGTGGTCAAGCCCAAAAAGTATAGGAAGCGGCCGAAGCCCGTGGAGCCGCCGGTGCGGATGTCGCGCGAGGAGATCGAGCGCCGCAAAAAGCAGCAGGACGAGTACGATGCCATCATAGTCAAGTTCTTCAACAGGTTTCCCTGCCACATATGCAATCTGCTGGTGCAGAACTTCGGCGACATGCGCCGCCACTTGCGGATGGCCCATCAAATCGAGTCGGGCTTTATGCTCTGCTGCGGCCGCAAGTTCCACATACGCAaggcgctggccgagcacGTGCTGGTCCACTGGAATCCCGAGCAGTTCAAGTGCACGAAATGCGATCGCAACTTCCAGGACTCGCGGTCCCTGGAGATCCACGAGCAGTCGCACACCAACCCCCAGGCGGAGGTCAAGGAGAAGCGCGTCTTCCACTGCGAGAAGTGCCCCAAGACCTTCACCAGCAAAGCCTCCATGGAGTATCACACGGCTTCCAAGCATGTGCCCAAGTCGGACTTCAAGTTCACCTGCCCCGAGTGCAATAAGAAAGTCCCCACGGAGCGCAAACTCAGGGAGCACCTGAAGTATATGCACGATCCGGAGACGGCTTTCATATGCGACAAGTGCGGCAAGACGGTGCGCTCCCAGGCGAATCTCAAGAAGCACCACGAGCTGGAACATTCCGACGAGCCGCGGCCCAAGCCCGACCCCGTCCAGTGCGGCATCTGCGGCACCTGGCTGCGCCACGTGTCCGGCCTCAAGCAGCACATGAAGACGATACACGAGCCGCCCGGCGAGGAGCACCGCTGCCCGATCTGCAACAAAACCTCCACCAACTCGCGGGCCCTCAAGCGCCACATCTACCACAACCACGAGTGCGAGCGCAAGTTCAAGTGCACCATGTGCGACAAGGCCTTCAAGCGCCCGCAGGACCTACGGGAGCACACTTCGACCCACACCGGCGAGGTGCTCTACACCTGCCCCAACTGCCCCATGACGTTCTTCTCGAACGCCAACATGTACAAGCACCGGCAGCGCCTGCATCGCGCCGAGTGGGAGGCCGACCGCAAGAAGCCGATGCCGCCGAACATCATGCAGCAGGCGATGGGCGCCACCTCCGCCATGAAGAAGCGGCAGACGGCCCACGTGAGCACGCCGCTCTTCAACCAGCCGGCGCCGGCGCAGCCCCTGCAGCTGCCCCAGAAGACGGAGCCGAGTGTGTGA
- Protein Sequence
- MASCVLCLESLGEIRQSIAVGSAEGLRLKICEAVNKHFWLELTINGHTDARKRICLECWQYVKSFNEFYQRVYEIHAQQRQSLGRSAPIEFFAEPLNPLGPEDNTSEIDALAEGFFAPNDIKVEIHELEMLPKDAELQDPVDTTTPMPHTTSKKLGNNPGSASGRKKVKCEKISAGSDSEVDIPLADFLTTDIKTDSNTSIPSPEETKRKQPLRRSGRMRKSSSAASAWDLKEELESDVDIGDFEFGPAAGLGTDDSSTSSSSSEEDSADSLPDVEPVERYAVIPKRVVVKPKKYRKRPKPVEPPVRMSREEIERRKKQQDEYDAIIVKFFNRFPCHICNLLVQNFGDMRRHLRMAHQIESGFMLCCGRKFHIRKALAEHVLVHWNPEQFKCTKCDRNFQDSRSLEIHEQSHTNPQAEVKEKRVFHCEKCPKTFTSKASMEYHTASKHVPKSDFKFTCPECNKKVPTERKLREHLKYMHDPETAFICDKCGKTVRSQANLKKHHELEHSDEPRPKPDPVQCGICGTWLRHVSGLKQHMKTIHEPPGEEHRCPICNKTSTNSRALKRHIYHNHECERKFKCTMCDKAFKRPQDLREHTSTHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRKKPMPPNIMQQAMGATSAMKKRQTAHVSTPLFNQPAPAQPLQLPQKTEPSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00904892;
- 90% Identity
- iTF_00904892;
- 80% Identity
- iTF_00904892;