Lnew013805.3
Basic Information
- Insect
- Liometoxenus newtonarum
- Gene Symbol
- bab1
- Assembly
- GCA_030264535.1
- Location
- JARJEB010022130.1:15202-16456[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-16 2.5e-13 49.9 0.0 1 43 48 91 48 93 0.95 2 2 1.3 1.8e+03 -0.9 0.7 6 15 179 188 177 208 0.84
Sequence Information
- Coding Sequence
- ATGAATCCTAATTTGTTCATTATTCTTTCAGCAGACAGCTACCAATACCAGTTGCAGTCGATGTGGCAGAAATGTTGGAACACAAACCAAAGTCTCGTCCACAATTTGCGCTTCCGTGAGAGAGGACCATTGAAATCCTGGCGGCCCGAAACGATGGCCGAGGCGATCATCTCCGTACTTAAAGAAGGCCTCTCGTTATCTCAGGCCGCCCGCAAATACGACATTCCTTATCCGACGTTCGTCCTCTACGCAAATCGAGTGCACAATATGCTCGGTCCTTCGGCCGATGGAGGTTCGGCAGATCTTAGACCTAAAGGACGAGGCCGACCACAAAGGATTCTGCTTGGACTATGGCCGGATGAACATATTCGTGGCGTTATTAGGGCGGTGGTGTTTAGAGATTCACATCAAATTAAGGAAGAACCACATATTGGATACCCGCGAATACACGATGGAGTGAGCAGCGTGCAAAGTTATCCAACAAACAACTGCAGCAACGGCTCCGATCCGAACGTATCACCTGGTGCGGCAACAGCGGCGGCAGTCGCCGCCGTCGCCCACGGCCTGCGGCAACAAATGTGCAGCATGGTGGCGGCGGCTCAACAGCATGCGAGCACCGCTCACGACACCAACCCTGTGGCGAGTCTAGTCAATTCCCTAGCACTCGCCGGCCATTGCGGCTCCGTTCCGCTCTCCAGCAATGGCATACCACCCATGAGTATAAACCAAATGACGTCAATGAGTCATATGACATCGATGCGAATGGCCAGTCCCGCCGGCAGTATTCAGGACTTGCGAATAAGCCCGGCTGGTTCGGGTCTCGAAAGCCCCATCTCGTCGCCGTTGGGACTCACCGTGTCGAGTAGTATGGAGAATGCGCTTAATTTGGGCATGAGCAACAACATGGATATGAGCATCGGCTCGGGGATGACTTACAAGCCGAATCGTTCGAATTTCACGTCGCCACGACCCGAGAATCTCTTCCAGGAGGATATCGACGAACTGGTGAAGCCGATGCATGCGAACACACCACGATCGAAAGACGCTATCGCTTCCATTAAAATGGAGCCGATGACAGAATGTCGAGGCGAATGA
- Protein Sequence
- MNPNLFIILSADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIISVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSADLRPKGRGRPQRILLGLWPDEHIRGVIRAVVFRDSHQIKEEPHIGYPRIHDGVSSVQSYPTNNCSNGSDPNVSPGAATAAAVAAVAHGLRQQMCSMVAAAQQHASTAHDTNPVASLVNSLALAGHCGSVPLSSNGIPPMSINQMTSMSHMTSMRMASPAGSIQDLRISPAGSGLESPISSPLGLTVSSSMENALNLGMSNNMDMSIGSGMTYKPNRSNFTSPRPENLFQEDIDELVKPMHANTPRSKDAIASIKMEPMTECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00904022;
- 90% Identity
- iTF_00429795;
- 80% Identity
- -