Laer006267.1
Basic Information
- Insect
- Liodrosophila aerea
- Gene Symbol
- MBD2
- Assembly
- GCA_035045005.1
- Location
- JAWNNL010000708.1:481852-483479[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.2e-24 1.3e-20 72.9 0.1 1 74 7 75 7 78 0.94 2 2 4.6e-05 0.11 12.2 0.0 27 75 175 232 152 234 0.84
Sequence Information
- Coding Sequence
- ATGAATCCAAGTATAACAATCGAACGAAAACGCGTTGACTGCAACGCACTACCAAAAGGTTGGCAGCGTGAAGAAGTACACAAGAAATCGGGCAGCAACTCGGGCGTTGATGTTTTCTACTACAGcCCCACTGGCAAGAGAATTGAAAGCAAGCCACAATTAGCGCGACAATTGAGCGCCGAGATGTTTGATATAAGCAACTTTGACTTTCAAACCGGCAAAATGCATCAATACCAACGTCAAATGCCATCTCCATCCATATCACTATACCGATGCAATGCAGCGGGTGCCATTATTAGTAACCCAGTAGCTGGTGGAAATGCTGCTAACGCACTAAAGCGTAAATTTAGTCGGACCCATTTACAAAGCTCGCActcgagcagcaacaacaacagcagcggagGAGGTTCCGTTGTGCCATCAATATCTTCAATATCATCTCCAGCAGcaaattcaacaacaacaacatcagccgCAGCTAATTtccgccaacaacaacagcaacagcaaattgaattcagTCGCAACCTACGCACAGATGTATCCCTGGTACCACCGATACGACAGACAGCTTCCATATTCAAGCAGCCGGTGACTGTGGTGCGCAATCATGAAGCCACCAAGGTTAAGCACGATGCCAAACACGGCGGCCAGGAGAAGCCGAAACAACTATTTTGGGAGAAACGCTTGGAACGCCTGCGCGCCTGCCATGATAACGGCGAGGAATTGGATGATATATCACTGCCAAAGACCATACGAACTGTCGGTCCCAATGTCAACGAGCAGACTGTATTGCAGTCTGTAGCTACGGCGCTACACATGCTCAATGCCGGTGTACACGGCCAGAGTTCCACAAAGGCTGAGCTAACCAAGAATGCAATGGCATTCATGAATCCAGAGCAACCGCTAATGCATGCGGTTATTGTATCAGAGGACGATATACGGAAACAGGAAGATCGTGTAGGTGTCGCACGGCGGAAATTACAGGATGCGCTCAAGATATAA
- Protein Sequence
- MNPSITIERKRVDCNALPKGWQREEVHKKSGSNSGVDVFYYSPTGKRIESKPQLARQLSAEMFDISNFDFQTGKMHQYQRQMPSPSISLYRCNAAGAIISNPVAGGNAANALKRKFSRTHLQSSHSSSNNNSSGGGSVVPSISSISSPAANSTTTTSAAANFRQQQQQQQIEFSRNLRTDVSLVPPIRQTASIFKQPVTVVRNHEATKVKHDAKHGGQEKPKQLFWEKRLERLRACHDNGEELDDISLPKTIRTVGPNVNEQTVLQSVATALHMLNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAVIVSEDDIRKQEDRVGVARRKLQDALKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00593092;
- 90% Identity
- -
- 80% Identity
- -