Ladu009953.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000261.1:97759-108715[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-75 1e-70 238.8 25.0 1 297 119 402 119 405 0.90 2 2 1 2.4e+04 -5.8 13.8 194 270 386 460 376 477 0.61
Sequence Information
- Coding Sequence
- ATGGGTAATCGGTCAGAATTGGCTACACCTGATAACAGCGACGATGAGAGCGGTGACGCCTTCACCGACGGAGACTTCGGAGACTCCGACGACGAGACTATTCTCAAACAAAATGGTTGCAAGACCTCCAATATACCTGTCAACGAGACGGTTAACGAACAAGTTAACAAAACTATCACAAATGGCAACAGCTCTCATAATGGACATGGCTCGTCTTCCGAAGATCAAACTAAAGTGAACGGACGTAAGAATAGTGATGTGGAAAACTATAATGCGACATCGGAAGTGAGACGGGATTCGCATGGAGATCAAAATCCTTCGATTGTGGGAATACTAGGAGACCAGCATAATCATGCAGAACAACGGCTAGCTGCGAGACGCGCGGCGCGGGCCGAGGCGCGCGAGATACGCATGCGAGAGCTCGAGCGGCAGCAGCGAGAGCAGGAGGACCATGCTGACAAAGCGTATGATATGTATGCAGAGACAGTGGTGCGGCGCGGCGGCACCCGGCTCGCGGCGCTCAGCCCCGCCGCCAGCCTCGTGCACTCGCCGCGGCGAAGCTCGGAAGACTCCGCTGACGACACATTTAATGTTAAAGACTTAAGGCACGAGTTGAAGGAAGTGGAGGAGAAATTCCGCAAGGCGATGATCCTGAACGCGCAACTGGACAATGATAAGGCGGCGCTGCACTACCAGCTCGAGCTGCTCAAGGACCGGCTGCTGGAGCTGCAGGAAGAGTACGCGCAGTTACAGCGCGAACACCGGGAGAAATGTTCAGCGCACGAGCGACTGAAGCGAGAGCACGTGTCGCTGGAGCGGGAGCTGGCGGGCGCGCGGGATTCGGTGCGGGCGCGGGACGCGGCGGCTGCGGCCGCGGGATACGCCTTCGTGGAGGCGGGGCTTAGCGAGCCGCACGCGCAAGGCTTCAGGGCCGTGCCGCCGCTCGCGCTTATATCGCACGCCACCGAACACGCGCTCGCCGCCGAGGGAGAGGGCACGCTGGACGTGCGGTTGCAGAAGCTAGTGAGTTCGAAGGTTGCGCTAGAGTCGGAGGTGCGTAAGCTGAAGCTCACGCTGAACGAAGAGCGTGCCGCGCGGCAGAACGGCGTCTCCAACCAGCACGACGCAGAGTACGAGAACGAACTGGAGAGTCTCCGCAAGAGTGTGAGTGAAGCGAAGGGTCGAGCGGCGCGCGCGGAGGCCGAGGCTGCGCTGCAGGCTGCCGGCGTCGCGCGACTCGAGGCGCAGCTGCAGCGACTGCGCGCGCGACAGGACGCCACCGACGAACACGAGGAGCGACTCAAGCAGGAGCGACGCAAGCTGCAGCGGGAGGCGCGGGAGGCTCTCAACCGAGTGGAAGAGTTGGAGACGGAGAACAGTCACCTGACGAAGCGGCTCGACAAACTGAAGAACGCTAAGTCTGCGCTGCTGAAGGAGCTGTGA
- Protein Sequence
- MGNRSELATPDNSDDESGDAFTDGDFGDSDDETILKQNGCKTSNIPVNETVNEQVNKTITNGNSSHNGHGSSSEDQTKVNGRKNSDVENYNATSEVRRDSHGDQNPSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVVRRGGTRLAALSPAASLVHSPRRSSEDSADDTFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALHYQLELLKDRLLELQEEYAQLQREHREKCSAHERLKREHVSLERELAGARDSVRARDAAAAAAGYAFVEAGLSEPHAQGFRAVPPLALISHATEHALAAEGEGTLDVRLQKLVSSKVALESEVRKLKLTLNEERAARQNGVSNQHDAEYENELESLRKSVSEAKGRAARAEAEAALQAAGVARLEAQLQRLRARQDATDEHEERLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00250477;
- 90% Identity
- -
- 80% Identity
- -