Ladu012427.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- retn
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000341.1:1271974-1281320[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.7e-20 1.8e-16 60.7 0.0 9 89 31 109 24 109 0.91 2 2 10 2.4e+04 -4.0 0.0 26 38 244 256 231 257 0.74
Sequence Information
- Coding Sequence
- ATGTCGCGTCGTCGAGGAGAGTTCGAGTCGAGTGCCCGTGGTACTGGCGCGCAAATAGCGCGGCCGGCCAGCGCGGCGCACGCGCGTCGAATCGCGCGTTTTCCGCCGCGGGCGCGCACGCCCATCAATCGGCTGCCTATAATGGCCAAGTCAGTGTTGGACCTGTACGAGTTGTACAACCTGGTCATAGCTCGTGGAGGCCTCGTCGAGGTCATCAACAAGAAGCTCTGGCAAGAGATTATCAAGGGCCTCCGGCTACCGTCTTCGATCACGTCTGCGGCCTTCACTTTACGCACACAGTATATGAAGTATTTATACGACTACGAGTGTGAGAAGAAGAACCTGTCCACTCGGAGTGAGCTGGACGCAGCCATTGAAGGCAACAAGCGGGAAGGAAGACGTGCTTCAGGACAGTATGATGCCCAAGCAGCGCTTGCTATGCCGCCGTTGAACCGTGGCGTGCCGGCGTCGCTGGCGCAGCTCTCGCAGCACATGCAGCCCTTGTCATTGTCCCTCGGAGGGGGGGTGGGGGGTGTCCCCCGCCTGCCCCCCTTACCCCCGCACGCGCCCCACATCAGCCAGCACGACATCGAGTACAGAGTCCGCGAGTACATGAAGATGATACAGACCCAACGAGAACTGATGAGGAATGGATCAGAATCTCCCCCGGGCGCCACGAACGGGCCGACTCCAATGATGTCTCCACGCGACGCGGCCGCTCTGAGCGCCATCGACGTGTCGCGCTTGACGCTGTGGTCACTATACAACAATAACAATAACAACAGTCCAGCGCCGCCGGACCTCGAGCCGCAACGAGAGGCTCTCAACCTGAGCGAGTCGCCGAATTCTTCAAGTAGCGTGAAGCGCGAGGCGTGCCGCTCCCCCCCGCCGCCCGCCAAGCGCCGCACCCCGCGCCCACCTTCCCCCCGCGCGCCCTCACCCCCACGGCCAGCCTGTGTGCCGCCGCACGCGCAGCTCAATGGCGCGCAGAATGGCGTCAACGGTGCAGCTTTCAAGATTACTACAAGAGGTGACGCAAACACCGGCGACCAACAGCTCGTAGTATCGATAGAGCTTAATGGCGTCACATACGAAGGTGTACTTTTCCCTTCACAAAATGGCAGCGGACAAAATGGCCACCGGCAAATGGTCTCTTAA
- Protein Sequence
- MSRRRGEFESSARGTGAQIARPASAAHARRIARFPPRARTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRGVPASLAQLSQHMQPLSLSLGGGVGGVPRLPPLPPHAPHISQHDIEYRVREYMKMIQTQRELMRNGSESPPGATNGPTPMMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPAPPDLEPQREALNLSESPNSSSSVKREACRSPPPPAKRRTPRPPSPRAPSPPRPACVPPHAQLNGAQNGVNGAAFKITTRGDANTGDQQLVVSIELNGVTYEGVLFPSQNGSGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00142878;
- 90% Identity
- iTF_00638435;
- 80% Identity
- -